View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0846_low_120 (Length: 337)
Name: NF0846_low_120
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_low_120 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 29 - 325
Target Start/End: Original strand, 25898430 - 25898718
Alignment:
| Q |
29 |
agtatcatggtagaaaaactcaaaacacaatgccattgtttgaggcataacaggtatttacaacaaaataaaacacatgaagaggaacctcatatgatat |
128 |
Q |
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|||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
25898430 |
agtatcatgggagaaaaactcaaaacacaatgccattgtctgaggcataacaggtatttacaacaaaataaaacacatgaagaggaaccttatatgatat |
25898529 |
T |
|
| Q |
129 |
gcttgtaagtctaatgacgacctttctggcgaacaatctcaacaaatagtgagttaggacttaggaagatcctcaagatcaaagaccaagctatcccctt |
228 |
Q |
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| T |
25898530 |
gcttgcaagtctaatgacgacctttctggcgaacaatctcaacaaatagtgag-------ttaggaggatcctcaagatcaaagaccaaactatcccctt |
25898622 |
T |
|
| Q |
229 |
gacgcaatttactatccttcagaaatttgttccaatcttcctcttaaatatttttcattcggacccctatttgaagtgataagtttgcagtcatatt |
325 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
25898623 |
gacgcaatttactatccttcagaaatttgttccaatcttcctc-taaatatttttcattcggacccctatttaaagtgataagtttgcagtcatatt |
25898718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 64
Target Start/End: Complemental strand, 6230073 - 6230039
Alignment:
| Q |
30 |
gtatcatggtagaaaaactcaaaacacaatgccat |
64 |
Q |
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|||||||||||| |||||||||||||||||||||| |
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| T |
6230073 |
gtatcatggtagcaaaactcaaaacacaatgccat |
6230039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 210 - 317
Target Start/End: Original strand, 37423041 - 37423146
Alignment:
| Q |
210 |
aagaccaagctatccccttgacgcaatttactatccttcagaaatttgttccaatcttcctcttaaatatttttcattcggacccctatttgaagtgata |
309 |
Q |
| |
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|||| ||| ||||||| |||||||||||| |||| |||||||||||||||||||| || || || |||||||||||| |||||||| ||||||||| || |
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| T |
37423041 |
aagaacaacctatccctttgacgcaatttgttatc-ttcagaaatttgttccaatcctc-tcctagatatttttcatttggacccctgtttgaagtggta |
37423138 |
T |
|
| Q |
310 |
agtttgca |
317 |
Q |
| |
|
|||||||| |
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|
| T |
37423139 |
agtttgca |
37423146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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