View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0846_low_124 (Length: 335)
Name: NF0846_low_124
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_low_124 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 99 - 326
Target Start/End: Complemental strand, 14592411 - 14592184
Alignment:
| Q |
99 |
aataaaagcaactgtatgatcaacattaagaacagaatagtaaactataagttagtttatgtaattgtttcaacaaacacttgttgtaattgttatacta |
198 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
14592411 |
aataaaagcaactgtatgattaacattaagaacataatagtaaactataagttagtttatgtaattgtttcaacaaacaattgctgtaattgttatacta |
14592312 |
T |
|
| Q |
199 |
gttaatttttgttcttttgagttgagatttcatcaatttggttattattaggattaagttgagaagctatccacctatgcccatgccattagagaagtag |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
14592311 |
gttaatttttgttcttttgagttgagatttcatcaatttggttcttattaggattaagttgagaagctatcaacctatgcccatgccattagagaagtag |
14592212 |
T |
|
| Q |
299 |
agaatgaagagttatgaagtataatcta |
326 |
Q |
| |
|
|||||||||||||||||||||| ||||| |
|
|
| T |
14592211 |
agaatgaagagttatgaagtattatcta |
14592184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 99 - 326
Target Start/End: Original strand, 13309158 - 13309385
Alignment:
| Q |
99 |
aataaaagcaactgtatgatcaacattaagaacagaatagtaaactataagttagtttatgtaattgtttcaacaaacacttgttgtaattgttatacta |
198 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
13309158 |
aataaaagcaactgtaggatcaacattaagaacaaaatagtgaactataagttagtttatgtaattgtatcaacaaacacttgttgtaattgttatacta |
13309257 |
T |
|
| Q |
199 |
gttaatttttgttcttttgagttgagatttcatcaatttggttattattaggattaagttgagaagctatccacctatgcccatgccattagagaagtag |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
13309258 |
gttaatttttgttcttttgagttgagatttcatcaatttgattattattaggattaagttgagaagctatcaacctatgcccatgccattagagaagtag |
13309357 |
T |
|
| Q |
299 |
agaatgaagagttatgaagtataatcta |
326 |
Q |
| |
|
|||||||||||||||||| ||| ||||| |
|
|
| T |
13309358 |
agaatgaagagttatgaattattatcta |
13309385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 108 - 197
Target Start/End: Original strand, 13787224 - 13787313
Alignment:
| Q |
108 |
aactgtatgatcaacattaagaacagaatagtaaactataagttagtttatgtaattgtttcaacaaacacttgttgtaattgttatact |
197 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
13787224 |
aactgtatgatcaacattaagaacataatagtaaactataagttagtttatgtaattgtttcaacaaacacttgttgtaattgttttact |
13787313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 275 - 326
Target Start/End: Complemental strand, 49282122 - 49282071
Alignment:
| Q |
275 |
atgcccatgccattagagaagtagagaatgaagagttatgaagtataatcta |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
49282122 |
atgcccatgccattagagaagtagagaatgaagagttatgaagtattatcta |
49282071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 111 - 180
Target Start/End: Original strand, 45909635 - 45909704
Alignment:
| Q |
111 |
tgtatgatcaacattaagaacagaatagtaaactataagttagtttatgtaattgtttcaacaaacactt |
180 |
Q |
| |
|
|||||||||| || |||||| | ||||| |||||||| || | ||| ||||||||||||||||||||||| |
|
|
| T |
45909635 |
tgtatgatcagcaataagaataaaatagaaaactataggtcaatttgtgtaattgtttcaacaaacactt |
45909704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 188 - 326
Target Start/End: Complemental strand, 21280674 - 21280536
Alignment:
| Q |
188 |
ttgttatactagttaatttttgttcttttgagttgagatttcatcaatttggttattattaggattaagttgagaagctatccacctatgcccatgccat |
287 |
Q |
| |
|
|||||||||||||| ||||||||| || | |||||||||||||||| | |||||| ||||||| |||| |||||||| ||||||| |||||| || |
|
|
| T |
21280674 |
ttgttatactagttgatttttgtttacttaaattgagatttcatcaatctagttattgttaggatattgttgttaagctatcaacctatgtccatgctat |
21280575 |
T |
|
| Q |
288 |
tagagaagtagagaatgaagagttatgaagtataatcta |
326 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||| ||||| |
|
|
| T |
21280574 |
tagagatgtagagaatgaagaattatgaagtattatcta |
21280536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 111 - 184
Target Start/End: Complemental strand, 21280953 - 21280880
Alignment:
| Q |
111 |
tgtatgatcaacattaagaacagaatagtaaactataagttagtttatgtaattgtttcaacaaacacttgttg |
184 |
Q |
| |
|
||||| |||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
21280953 |
tgtataatcaacattaagaacataatagaaaacaataagttagtttatgtaattgtttcaacaaacatttgttg |
21280880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 275 - 326
Target Start/End: Original strand, 13935724 - 13935775
Alignment:
| Q |
275 |
atgcccatgccattagagaagtagagaatgaagagttatgaagtataatcta |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
13935724 |
atgcccatgccattagagaagtagagaatgcagagttatgaagtattatcta |
13935775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 226 - 308
Target Start/End: Complemental strand, 4855485 - 4855403
Alignment:
| Q |
226 |
tttcatcaatttggttattattaggattaagttgagaagctatccacctatgcccatgccattagagaagtagagaatgaaga |
308 |
Q |
| |
|
||||||||| |||||||||||||||| |||||| |||| |||| ||||||||| |||||||||||| |||||| ||||||| |
|
|
| T |
4855485 |
tttcatcaacatggttattattaggatgaagttgtgaagttatcaccctatgcccgtgccattagagacgtagaggatgaaga |
4855403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 173 times since January 2019
Visitors: 6046