View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0846_low_130 (Length: 326)
Name: NF0846_low_130
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_low_130 |
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Alignment Details
Target: chr6 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 111 - 309
Target Start/End: Complemental strand, 20480229 - 20480031
Alignment:
| Q |
111 |
gcaaggataaatatagtgttattgattactcaattttaatacatttgaataacctagataggattagctactcacagtttataaacatttacaaatagat |
210 |
Q |
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| T |
20480229 |
gcaaggataaatatagtgttattgattactcaattttaatacatttgaataacctagataggattagctactcacagtttgtaaacatttacaaatagat |
20480130 |
T |
|
| Q |
211 |
ataaataaaaacatgagtaaaggataatcagttgatgtttcttggctcctaaatggatctcgctgcttcaatccttctgaaattgcatttgtgcctttg |
309 |
Q |
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| T |
20480129 |
atgaataaaaacatgagtaaaggataatcagttgatgattcttggctcctaaatggatctcgccgcttcaatccttctgaaattgcgtttgtgcctttg |
20480031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 218
Target Start/End: Original strand, 28485230 - 28485288
Alignment:
| Q |
160 |
taacctagataggattagctactcacagtttataaacatttacaaatagatataaataa |
218 |
Q |
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||||||||| ||||||||||||||| |||| ||||||| |||||||||| || ||||| |
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| T |
28485230 |
taacctagagaggattagctactcatagttcctaaacatatacaaatagagatgaataa |
28485288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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