View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0846_low_135 (Length: 318)
Name: NF0846_low_135
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_low_135 |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 35 - 306
Target Start/End: Original strand, 26969269 - 26969540
Alignment:
| Q |
35 |
ttcccttctttcgccttctcagccgtataatccttatactcacccatcttattcagggtggcatctttcccttctttcgccttctcagccgtataatcct |
134 |
Q |
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| T |
26969269 |
ttcccttccttcgccttctcagctgtataatccttatactcacccatcttattcatggtggcatctttcccttctttcgccttctcagccgtataatcct |
26969368 |
T |
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| Q |
135 |
tatactcacccatcttattcatggtagcatcttttccttcctttgccttttccgcagcatagtctttgtactccccagctttgtccttggcttcccttgc |
234 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26969369 |
tatactcacccatcttattcatggtagcatcttttccttcctttgccttttccgcagcatagtctttgtactccccagctttgtccttggcttcccttgc |
26969468 |
T |
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| Q |
235 |
tttctctccggcataacctgcatactcattagttttctgcatcgttgcatcttttgtttccttcgccttctg |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26969469 |
tttctctccggcataacctgcatactcattagttttctgcatcgttgcatcttttgtttccttcgccttctg |
26969540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 26969301 - 26969417
Alignment:
| Q |
1 |
cttatactcacccatcttattcagggtggcatctttcccttctttcgccttctcagccgtataatccttatactcacccatcttattcagggtggcatct |
100 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
26969301 |
cttatactcacccatcttattcatggtggcatctttcccttctttcgccttctcagccgtataatccttatactcacccatcttattcatggtagcatct |
26969400 |
T |
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| Q |
101 |
ttcccttctttcgcctt |
117 |
Q |
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| T |
26969401 |
tttccttcctttgcctt |
26969417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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