View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0846_low_137 (Length: 316)
Name: NF0846_low_137
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_low_137 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 15 - 316
Target Start/End: Complemental strand, 25141207 - 25140907
Alignment:
| Q |
15 |
tataatagagaaccataataaacttcaattataaccatatattccaccatagctagatagaatgtacctttcattgcggttaagacgagctccaagatag |
114 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
25141207 |
tataatagagaaccataataaacatcaattataaccatatattccacc-tagctagatagaatgtacctttcattgcggttaagacgagctccgagatag |
25141109 |
T |
|
| Q |
115 |
aacgccacagaaagcaaccatgaatcactgtgcacagcaacaagagaaagccaatccctacggttcataccatctcgagcaaaattgattccaagagctg |
214 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
25141108 |
aaggccacagaaagcaaccatgaatcactgtgcacagcaacaagagaaagccaatccctacggttcatgccgtctcgagcaaaattgattccaagagctg |
25141009 |
T |
|
| Q |
215 |
gctcagggagttccggcggaacttcctctgctggcagagttacttcccagctttcattattatgaccatagaggcacaaattatccttatctaaacaaac |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25141008 |
gctcagggagttccggcggaacttcctctgctggcagagttacttcccagctttcattattatgaccatagaggcacaaattatccttatctaaacaaac |
25140909 |
T |
|
| Q |
315 |
ac |
316 |
Q |
| |
|
|| |
|
|
| T |
25140908 |
ac |
25140907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 78 - 306
Target Start/End: Original strand, 4790030 - 4790258
Alignment:
| Q |
78 |
gtacctttcattgcggttaagacgagctccaagatagaacgccacagaaagcaaccatgaatcactgtgcacagcaacaagagaaagccaatccctacgg |
177 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
4790030 |
gtacctttcgttgcggttaagacgagctccaagataaaaagccacagaaagcaaccatgaatcactgtgcacagcaactagagaaagccagtccctacgg |
4790129 |
T |
|
| Q |
178 |
ttcataccatctcgagcaaaattgattccaagagctggctcagggagttccggcggaacttcctctgctggcagagttacttcccagctttcattattat |
277 |
Q |
| |
|
||||| ||||| | ||||| ||||||||||| |||||||| || || || || ||||||||||| || || ||||| |||||||| |||||| ||| |
|
|
| T |
4790130 |
ttcatgccatcccttgcaaagttgattccaagggctggctctggaagctcaggtggaacttcctcagcaggaagagtcacttcccatgattcatttgtat |
4790229 |
T |
|
| Q |
278 |
gaccatagaggcacaaattatccttatct |
306 |
Q |
| |
|
| |||||||| |||||||| ||||||||| |
|
|
| T |
4790230 |
gtccatagagacacaaattgtccttatct |
4790258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 873 times since January 2019
Visitors: 6037