View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0846_low_15 (Length: 602)
Name: NF0846_low_15
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 473; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 56 - 592
Target Start/End: Original strand, 28100797 - 28101333
Alignment:
| Q |
56 |
tttgtcgttcttgctagtcaaaaaaggaatccaaagagggctagagattgttgttcttgctagaaaaatttactattgtgactgtatggttaatttggag |
155 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
28100797 |
tttgtcgttcttgctagtcaaaaaaggaatccaaagggggctagagattgtcgttcttgctagaaaaatttactattgtgactgtatggtcaatttggag |
28100896 |
T |
|
| Q |
156 |
agctagaaacggcagtttgttcaataatagggtacttttagtacaagaagtggttgagaaaattaaggtgttcgtggcgttggttccctggtcgaggagt |
255 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
28100897 |
agctagaaacggcagtttgttcaataatagggtacttttagtacaagaagtggttgagaaaattaaggtgttcgtggcgttggttccttggtcgaggagt |
28100996 |
T |
|
| Q |
256 |
ttggtttccatgtatgaattacaaatggatgttgtatcctcaaaggtgtatggtcaactaatttatctcacttttcaatgtggcgaggggttgagttctt |
355 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
28100997 |
ttggtttccatgtatgtattacaaatggatgttgtatcctcaaaggtgtatggtcaactaatttatctcacttttcaatgtggcgagggggtgagttctt |
28101096 |
T |
|
| Q |
356 |
tgggatgctgcgatttgttgagtttgtttctgtcatggtctaattccttaattgattctcggtagtagttctatgtggcttttagcgatgtttcaaaatt |
455 |
Q |
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| T |
28101097 |
tgggatgctgcgatttgttgagtttgtttctgtcatggtctaattccttaattgcttctcggtagtagttctatgtggtttttagcgatgtttcaaaatt |
28101196 |
T |
|
| Q |
456 |
gtgaggtacggaggctgctgcttggttgttcttctagcctatgatgtgtttctgttttgctctagagtaatctggttttttggccggcagtttgtttcta |
555 |
Q |
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| T |
28101197 |
gtgaggtacggaggctgctgcttggttgttcttctagcccatgttgtgtttctgttttgctctagagtaatctggttggttcgcctgcagtttgtttctg |
28101296 |
T |
|
| Q |
556 |
ccgtctcctgcaacagtttgtattattcgagtctgtg |
592 |
Q |
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| T |
28101297 |
ccgtctcctgcaactgtttgtattattcgagtctgtg |
28101333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 97 - 588
Target Start/End: Original strand, 28103582 - 28104088
Alignment:
| Q |
97 |
tagagattgttgttcttgctagaaaaatttactattgtgactgtatggttaatttggagagctagaaacggcagtttgttcaataa-----tagggtact |
191 |
Q |
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||||||| || |||||||||| |||||||||||| ||| |||||||||| ||||||||||||||| |||| | ||||||||||| | ||||||||| |
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| T |
28103582 |
tagagatcgtcgttcttgctaaaaaaatttactactgtaactgtatggtcaatttggagagctaggaacgaccgtttgttcaatgaattgatagggtact |
28103681 |
T |
|
| Q |
192 |
tttagtacaagaagtggttgagaaaattaaggtgttcgtggcgttggttccctggtcgaggagtttggtttccatgtatgaattacaaatggatgttgta |
291 |
Q |
| |
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| T |
28103682 |
ttcggtacaagaagtgtttgagaaaattaaggtgttcgtggtggtggttccttggccaaggagtttcgtttccatgtatttattacaaaggggtgtggga |
28103781 |
T |
|
| Q |
292 |
tcctcaaaggtgtatggtcaactaatttatctcacttttcaatgtggcg-aggggt--tgagttctttggga----tgctgcgatttg--ttgagtttgt |
382 |
Q |
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|||||||||||| |||||||||||| ||||||| |||||| ||||| | |||||| ||| || ||||||| |||||| || || |||||||||| |
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| T |
28103782 |
tcctcaaaggtgcatggtcaactaagttatctcgcttttcggtgtggtgaaggggtggtgaattttttgggaggtctgctgcaatctgttttgagtttgt |
28103881 |
T |
|
| Q |
383 |
ttctgtcatggtctaattccttaattgattctcggtagtagttctatgtggcttttagcgatgtttcaaaattgtgaggtacggaggctgctgcttggtt |
482 |
Q |
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|||||||| || || ||| || | | ||||||||||||||||||||||| ||||||| ||||||| ||||||||||| ||||||||| ||||||||| |
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| T |
28103882 |
ttctgtcaagggctgcttctttgaccggttctcggtagtagttctatgtggattttagcattgtttcagaattgtgaggtgcggaggctgatgcttggtt |
28103981 |
T |
|
| Q |
483 |
gttcttctagcctatg-atgtgtttctgttttgctctagagtaatctggttttttggccggcagtttgtttctaccgtctcctgcaacagtttgtattat |
581 |
Q |
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||||||||||||||| |||| |||||| |||| ||| ||||||||| || || ||||||||||| | || ||| ||||| |||||||| |||| |
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| T |
28103982 |
attcttctagcctatgtccacgtttatgttttactcttgagaaatctggttggttcacctgcagtttgttttttccatctgctgcatcagtttgtgttat |
28104081 |
T |
|
| Q |
582 |
tcgagtc |
588 |
Q |
| |
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| T |
28104082 |
tcgagtc |
28104088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 452 - 588
Target Start/End: Original strand, 26640877 - 26641014
Alignment:
| Q |
452 |
aattgtgaggtacggaggctgctgcttggttgttcttctagcctatgat-gtgtttctgttttgctctagagtaatctggttttttggccggcagtttgt |
550 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||||||| || | |||| |||||| |||| ||||||||||||| || ||| ||||||||| |
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| T |
26640877 |
aattgtgaggcacagaggctgctgcttggttgttcttctagcctgtgtccgcgtttatgtttttctctggagtaatctggttggttcgcctgcagtttgt |
26640976 |
T |
|
| Q |
551 |
ttctaccgtctcctgcaacagtttgtattattcgagtc |
588 |
Q |
| |
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|||| || ||| ||||| |||||||||||||| ||||| |
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| T |
26640977 |
ttcttccatctgctgcatcagtttgtattatttgagtc |
26641014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 118
Target Start/End: Original strand, 28100768 - 28100813
Alignment:
| Q |
73 |
tcaaaaaaggaatccaaagagggctagagattgttgttcttgctag |
118 |
Q |
| |
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|||||||| ||||||||| |||||||||| |||| ||||||||||| |
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| T |
28100768 |
tcaaaaaaagaatccaaaaagggctagagtttgtcgttcttgctag |
28100813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 15239352 - 15239310
Alignment:
| Q |
7 |
ctaatgttgtgatgtttgttttgagtgcttctccggcaacagc |
49 |
Q |
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| T |
15239352 |
ctaatgttgtgatgtttgttttgagtgcttctccggcaacagc |
15239310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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