View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0846_low_153 (Length: 296)
Name: NF0846_low_153
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_low_153 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 53 - 296
Target Start/End: Original strand, 40470130 - 40470373
Alignment:
| Q |
53 |
gtatcataggtgtgaacaagttgaccaaatttcaaaggtcaatgaaactaaggatgataaaaaacaaaagatatgacacagtttcttttccttctttatc |
152 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40470130 |
gtatcataggtgtgaacaagttgaccaaatttcaaaggtcaatgaaactaaggatgataaaaaacaaaagatatgacacagtttcttttccttctttatc |
40470229 |
T |
|
| Q |
153 |
aatataattccagtcaattaattatgacccaaatctagtggagtcttacgtgaatttctcaaaatctcaattaatttactgtcccagtgagtctttaata |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40470230 |
aatataattccagtcaattaattatgacccaaatctagtggagtcttacgtgaacttctcaaaatctcaattaatttactgtcccagtgagtctttaata |
40470329 |
T |
|
| Q |
253 |
gacggcattagcattaaataatccattacttacatcactttgtt |
296 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
40470330 |
gacggcattatcattaaataatccattacttacatcactttgtt |
40470373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 861 times since January 2019
Visitors: 6036