View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0846_low_163 (Length: 285)
Name: NF0846_low_163
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_low_163 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 7 - 285
Target Start/End: Original strand, 42082872 - 42083128
Alignment:
| Q |
7 |
gtatcatagggaagataatcctcctgattaggacaccaaggaaatccattaagcagcaacttcttgtcaataatttgtggaaatttcattctgaatgttt |
106 |
Q |
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| T |
42082872 |
gtatcaaagggaagataatcctcctgattaggacaccaaggaaatccattaagcagcaacttcttgtcaataatttgtggtaagttcattctgaatgttt |
42082971 |
T |
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| Q |
107 |
cgagataccatatcaaacctgtcaaactgcattgagtaggatgcacggccctctgtcagcaccctaagtgtaccgacatacataaacatctcagcaatgg |
206 |
Q |
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| T |
42082972 |
cgagataccgtatcaaacctgtcaaactgcattgagtaggatgcacggccctctgtcagcaccctaagtgtaccgacatacagaaacatctcagc----- |
42083066 |
T |
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| Q |
207 |
gtactaatgactcaaccacctgttttcacaaccaccaaaaggaagaaaacaatattcagttctagatgatacaacaaac |
285 |
Q |
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| T |
42083067 |
-----------------acctgttttcacaaccaccaaaaggaagaaaacaatattcagttctagatgatacaacaaac |
42083128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 6 - 270
Target Start/End: Original strand, 42086356 - 42086611
Alignment:
| Q |
6 |
agtatcatagggaagataatcctcctgattaggacaccaaggaaatccattaagcagcaacttcttgtcaataatttgtggaaatttcattctgaatgtt |
105 |
Q |
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| T |
42086356 |
agtatcaaaaggaagataaccctcgtggttaggacaccaaggaaataaattatgcagaaacttcttg-cact--tttgtggcaagttgattctgaatgtg |
42086452 |
T |
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| Q |
106 |
tcgagataccatatcaaacctgtcaaactgcattgagtaggatgcacggccctctgtcagcaccctaagtgtaccgacatacataaacatctcagcaatg |
205 |
Q |
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| T |
42086453 |
ttgaggtaccacatcaaacatggctaattgcatagagtatgatgcacgaccctttgtcatccctcttagtgtactgacatactgaaacatctcagcaaga |
42086552 |
T |
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| Q |
206 |
ggtactaatgactcaaccacctgttttcacaaccaccaaaaggaagaaaacaatattcagttcta |
270 |
Q |
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| T |
42086553 |
ggtactaatgaatcaaccacctgtttt------caccaaaaggaagaaaacaatgttcagttcta |
42086611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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