View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0846_low_166 (Length: 280)
Name: NF0846_low_166
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_low_166 |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 48592024 - 48592278
Alignment:
| Q |
1 |
gcacgattaccacctcaccctccaagtccaccagcaataccaataattggacatcttcatctcctcaaaccactcattcatcaggcctttcgccacctct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48592024 |
gcacgattaccacctcaccctccaagtccaccagcaataccaataattggacatcttcatctcctcaaaccactcattcatcaggcctttcgccacctct |
48592123 |
T |
|
| Q |
101 |
ccgatcaatatggccctttaatatcccttcgacttggctcctctcaatttatcattgttaacactccatcactcgccaaagagtttctcaagacacatga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48592124 |
ccgatcaatatggccctttaatatcccttcgacttggctcctctcaatttatcattgttaacactccatcactcgccaaagagtttctcaagacacatga |
48592223 |
T |
|
| Q |
201 |
gctcacttattctcaccgtaaaatgagcatagccatcaacgtagttgcctatgat |
255 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48592224 |
gctcacttattctcaccgtaaaatgagcatagccatcaacgtagttgcctatgat |
48592278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 48601719 - 48601973
Alignment:
| Q |
1 |
gcacgattaccacctcaccctccaagtccaccagcaataccaataattggacatcttcatctcctcaaaccactcattcatcaggcctttcgccacctct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48601719 |
gcacgattaccacctcaccctccaagtccaccagcaataccaataattggacatcttcatctcctcaaaccactcattcatcaggcctttcgccacctct |
48601818 |
T |
|
| Q |
101 |
ccgatcaatatggccctttaatatcccttcgacttggctcctctcaatttatcattgttaacactccatcactcgccaaagagtttctcaagacacatga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48601819 |
ccgatcaatatggccctttaatatcccttcgacttggctcctctcaatttatcattgttaacactccatcactcgccaaagagtttctcaagacacatga |
48601918 |
T |
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| Q |
201 |
gctcacttattctcaccgtaaaatgagcatagccatcaacgtagttgcctatgat |
255 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48601919 |
gctcacttattctcaccgtaaaatgagcatagccatcaacgtagttgcctatgat |
48601973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 18 - 255
Target Start/End: Complemental strand, 23232291 - 23232054
Alignment:
| Q |
18 |
ccctccaagtccaccagcaataccaataattggacatcttcatctcctcaaaccactcattcatcaggcctttcgccacctctccgatcaatatggccct |
117 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||| ||||| ||| ||||||| || | |||||| ||| |
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| T |
23232291 |
ccctccaagtccaccaacaataccaataattggacatcttcatctccttaaaccacttattcatcatgccttccgcgacctctctgagcgatatggacct |
23232192 |
T |
|
| Q |
118 |
ttaatatcccttcgacttggctcctctcaatttatcattgttaacactccatcactcgccaaagagtttctcaagacacatgagctcacttattctcacc |
217 |
Q |
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| |||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23232191 |
cttatatcccttcgacttggctctgctcgatttatagttgttaacactccatcactcgccaaagagtttctcaagacacatgagctcacttattctcacc |
23232092 |
T |
|
| Q |
218 |
gtaaaatgagcatagccatcaacgtagttgcctatgat |
255 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
23232091 |
gtaaaatgagcatagccatcaacgtagttgcctatgat |
23232054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 12 - 240
Target Start/End: Complemental strand, 23224964 - 23224736
Alignment:
| Q |
12 |
acctcaccctccaagtccaccagcaataccaataattggacatcttcatctcctcaaaccactcattcatcaggcctttcgccacctctccgatcaatat |
111 |
Q |
| |
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|||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||| ||||||| ||||||||| ||||||| |||| |||| |
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| T |
23224964 |
accttaccctccaagtccactagcaataccaataattggtcatcttcatctcctcaaacccctcgttcatcaagcctttcgcgacctctctgatcgatat |
23224865 |
T |
|
| Q |
112 |
ggccctttaatatcccttcgacttggctcctctcaatttatcattgttaacactccatcactcgccaaagagtttctcaagacacatgagctcacttatt |
211 |
Q |
| |
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|| || | ||||||||||||||||| || || ||||||| |||||| | ||||||||||| |||||||||||||| ||| | ||||| ||||| |
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| T |
23224864 |
ggaccccttatatcccttcgacttggttctgttccatttatcgttgttagttccccatcactcgcaaaagagtttctcaaaacaaacgagcttgtttatt |
23224765 |
T |
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| Q |
212 |
ctcaccgtaaaatgagcatagccatcaac |
240 |
Q |
| |
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|| ||||||||||| ||| ||||||||| |
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| T |
23224764 |
cttcccgtaaaatgaacattgccatcaac |
23224736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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