View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0846_low_167 (Length: 279)

Name: NF0846_low_167
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0846_low_167
NF0846_low_167
[»] chr2 (5 HSPs)
chr2 (73-234)||(4661322-4661483)
chr2 (41-75)||(4661585-4661619)
chr2 (158-235)||(13866939-13867016)
chr2 (171-228)||(24347790-24347847)
chr2 (159-232)||(28803463-28803536)
[»] chr3 (2 HSPs)
chr3 (159-232)||(2606244-2606316)
chr3 (159-229)||(44014731-44014801)
[»] chr7 (2 HSPs)
chr7 (178-232)||(36537972-36538026)
chr7 (159-232)||(39542233-39542306)
[»] chr8 (5 HSPs)
chr8 (159-232)||(30191074-30191147)
chr8 (159-229)||(16162827-16162897)
chr8 (159-232)||(6950386-6950459)
chr8 (168-232)||(11569399-11569463)
chr8 (159-231)||(45098906-45098978)
[»] chr5 (3 HSPs)
chr5 (137-226)||(14599283-14599372)
chr5 (159-232)||(32172717-32172790)
chr5 (159-231)||(11700228-11700299)
[»] chr1 (1 HSPs)
chr1 (160-234)||(44928125-44928199)
[»] chr4 (2 HSPs)
chr4 (159-232)||(24370884-24370957)
chr4 (159-231)||(37575869-37575941)


Alignment Details
Target: chr2 (Bit Score: 142; Significance: 1e-74; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 73 - 234
Target Start/End: Complemental strand, 4661483 - 4661322
Alignment:
Q  73 ttagaaaataacttaaactggagagtaaagaaatacaattaatccttggtttctcaaaacaaacatagggcctgttacgatttagctatttgagtttatc 172  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  4661483 ttagaaaataacttaaactggagagtaaagaaatacaattaatccttggtttctcaaaacaaacttagggcctgttacgatttagctatttgagtttatc 4661384  T
Q  173 tactcgcataacctcttgtaagattgtttcagagaacttatggaagcaacttatgacatgcc 234  Q
    |||||  |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  4661383 tactcatataaactcttgtaagattgtttcaaagaacttatggaagcaacttatgacatgcc 4661322  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 75
Target Start/End: Complemental strand, 4661619 - 4661585
Alignment:
Q  41 atactcatcttcatcttcagttgtaaacattgtta 75  Q
    ||||||||||||||||||||||| |||||||||||    
T  4661619 atactcatcttcatcttcagttgcaaacattgtta 4661585  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 235
Target Start/End: Complemental strand, 13867016 - 13866939
Alignment:
Q  158 ctatttgagtttatctactcgcataacctcttgtaagattgtttcagagaacttatggaagcaacttatgacatgcct 235  Q
    ||||||||| |||||||||  ||||| | ||||| ||| ||||| |||||||||| | || |||| ||||||||||||    
T  13867016 ctatttgagcttatctactgccataaacacttgtgagactgtttgagagaacttaagaaaacaacctatgacatgcct 13866939  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 24347847 - 24347790
Alignment:
Q  171 tctactcgcataacctcttgtaagattgtttcagagaacttatggaagcaacttatga 228  Q
    |||||||||||||   ||||| ||| | |||||||||||||||| |||||||||||||    
T  24347847 tctactcgcataagtacttgtgagactatttcagagaacttatgaaagcaacttatga 24347790  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 232
Target Start/End: Original strand, 28803463 - 28803536
Alignment:
Q  159 tatttgagtttatctactcgcataacctcttgtaagattgtttcagagaacttatggaagcaacttatgacatg 232  Q
    |||||||| ||||||||  |||||| | | ||| ||| ||||| ||||||| ||||||| ||||||||||||||    
T  28803463 tatttgagcttatctaccggcataagcacatgtgagactgtttgagagaacatatggaaacaacttatgacatg 28803536  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 232
Target Start/End: Original strand, 2606244 - 2606316
Alignment:
Q  159 tatttgagtttatctactcgcataacctcttgtaagattgtttcagagaacttatggaagcaacttatgacatg 232  Q
    ||||||||||||||||| ||||||||  |||||| || ||||| ||||| ||||||||| ||||||||||||||    
T  2606244 tatttgagtttatctacacgcataaca-cttgtaggactgtttgagagatcttatggaaacaacttatgacatg 2606316  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 229
Target Start/End: Original strand, 44014731 - 44014801
Alignment:
Q  159 tatttgagtttatctactcgcataacctcttgtaagattgtttcagagaacttatggaagcaacttatgac 229  Q
    |||||||||||||||||| |||||| | ||||| ||| ||||| ||| |||||||| || || ||||||||    
T  44014731 tatttgagtttatctactagcataaacacttgtgagactgtttgagaaaacttatgaaaacagcttatgac 44014801  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 232
Target Start/End: Complemental strand, 36538026 - 36537972
Alignment:
Q  178 gcataacctcttgtaagattgtttcagagaacttatggaagcaacttatgacatg 232  Q
    |||||| | ||||| ||||||||| ||||||||||||||| ||||||||||||||    
T  36538026 gcataaacacttgtgagattgtttgagagaacttatggaaacaacttatgacatg 36537972  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 232
Target Start/End: Original strand, 39542233 - 39542306
Alignment:
Q  159 tatttgagtttatctactcgcataacctcttgtaagattgtttcagagaacttatggaagcaacttatgacatg 232  Q
    |||||||||||||||||| |||||| | ||||  |||  |||| ||||| |||||||||  |||||||||||||    
T  39542233 tatttgagtttatctactagcataagcacttgcgagacagttttagagagcttatggaaataacttatgacatg 39542306  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 232
Target Start/End: Original strand, 30191074 - 30191147
Alignment:
Q  159 tatttgagtttatctactcgcataacctcttgtaagattgtttcagagaacttatggaagcaacttatgacatg 232  Q
    |||||||||||||||| | |||||| | ||||| ||| |||||  |||| ||||||||| ||||||||||||||    
T  30191074 tatttgagtttatctattggcataagcacttgttagactgtttgggagagcttatggaaacaacttatgacatg 30191147  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 229
Target Start/End: Complemental strand, 16162897 - 16162827
Alignment:
Q  159 tatttgagtttatctactcgcataacctcttgtaagattgtttcagagaacttatggaagcaacttatgac 229  Q
    |||||||||||||||||| |||||| | ||||| ||| ||||| ||| |||||||| || || ||||||||    
T  16162897 tatttgagtttatctactagcataaacacttgtgagactgtttgagaaaacttatgaaaacagcttatgac 16162827  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 232
Target Start/End: Complemental strand, 6950459 - 6950386
Alignment:
Q  159 tatttgagtttatctactcgcataacctcttgtaagattgtttcagagaacttatggaagcaacttatgacatg 232  Q
    |||||||||||||||||| |||||| |  |||| |||||||||  |||| |||||| || |||| |||||||||    
T  6950459 tatttgagtttatctactggcataaacatttgtgagattgtttgggagagcttatgtaaacaacctatgacatg 6950386  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 232
Target Start/End: Original strand, 11569399 - 11569463
Alignment:
Q  168 ttatctactcgcataacctcttgtaagattgtttcagagaacttatggaagcaacttatgacatg 232  Q
    |||||| || |||||||| ||||| ||| ||||| ||||| ||||||||| || |||||||||||    
T  11569399 ttatctgctggcataaccacttgtgagactgtttaagagagcttatggaaacagcttatgacatg 11569463  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 231
Target Start/End: Original strand, 45098906 - 45098978
Alignment:
Q  159 tatttgagtttatctactcgcataacctcttgtaagattgtttcagagaacttatggaagcaacttatgacat 231  Q
    |||| ||| ||||||||| |||||| | ||||  |||||||||| |||||| |||| || |||||||||||||    
T  45098906 tattcgagcttatctactggcataaacacttgagagattgtttccgagaacctatgaaaacaacttatgacat 45098978  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 226
Target Start/End: Original strand, 14599283 - 14599372
Alignment:
Q  137 atagggcctgttacgatttagctatttgagtttatctactcgcataacctcttgtaagattgtttcagagaacttatggaagcaacttat 226  Q
    ||||||||||||  |||| || |||||||  |||| |||| |||||| | ||||||||||||||| ||||| ||||| ||| ||||||||    
T  14599283 atagggcctgtttggattcagttatttgaacttatttactagcataaacacttgtaagattgtttgagagagcttatcgaaacaacttat 14599372  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 232
Target Start/End: Complemental strand, 32172790 - 32172717
Alignment:
Q  159 tatttgagtttatctactcgcataacctcttgtaagattgtttcagagaacttatggaagcaacttatgacatg 232  Q
    |||||||| |||| |||| |||||| | ||||| |||| ||||  |||| ||||||||| ||||||||||||||    
T  32172790 tatttgagcttatatactagcataagcacttgtgagatagtttgggagagcttatggaaacaacttatgacatg 32172717  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 231
Target Start/End: Complemental strand, 11700299 - 11700228
Alignment:
Q  159 tatttgagtttatctactcgcataacctcttgtaagattgtttcagagaacttatggaagcaacttatgacat 231  Q
    |||||||| ||||| ||| ||||||  | |||| ||| ||||||| ||||||||||||| |||||||||||||    
T  11700299 tatttgagcttatccactggcataagtt-ttgtgagactgtttcacagaacttatggaaacaacttatgacat 11700228  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 234
Target Start/End: Original strand, 44928125 - 44928199
Alignment:
Q  160 atttgagtttatctactcgcataacctcttgtaagattgtttcagagaacttatggaagcaacttatgacatgcc 234  Q
    ||||||| |||| |||| | |||| | |||||||||||||||   ||||||||| ||| ||||||||||||||||    
T  44928125 atttgagcttatttactagtataagcacttgtaagattgtttggaagaacttatagaaacaacttatgacatgcc 44928199  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 232
Target Start/End: Original strand, 24370884 - 24370957
Alignment:
Q  159 tatttgagtttatctactcgcataacctcttgtaagattgtttcagagaacttatggaagcaacttatgacatg 232  Q
    |||||||| ||||||| |||||||| | | ||| ||| ||||| | | ||||||||||| ||||||||||||||    
T  24370884 tatttgagcttatctattcgcataagcacatgtgagaatgtttgataaaacttatggaaacaacttatgacatg 24370957  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 231
Target Start/End: Original strand, 37575869 - 37575941
Alignment:
Q  159 tatttgagtttatctactcgcataacctcttgtaagattgtttcagagaacttatggaagcaacttatgacat 231  Q
    ||||||||||||||| || |||||| |||| || | ||||||| |||||||||||| ||  ||||||| ||||    
T  37575869 tatttgagtttatctgctagcataaactctcgtgacattgtttgagagaacttatgaaaataacttataacat 37575941  T

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