View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0846_low_168 (Length: 277)
Name: NF0846_low_168
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_low_168 |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 6e-86; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 55 - 270
Target Start/End: Original strand, 1382509 - 1382710
Alignment:
| Q |
55 |
ttatattgtgaataacatgagtcaagcaggagatttgaagataatatttgtaaacaattaaggttgtaccttcacaggattccttaaacagacgcttagc |
154 |
Q |
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| T |
1382509 |
ttatattgtgaataacatgagtcaagcaggagatttgaag--------------caattaaggttgtaccttcacaggattccttaaacagacgcttagc |
1382594 |
T |
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| Q |
155 |
atcgtatggacctgaaatcacacgaatatttagagaacttttatgagattttgttacaaaacctacatatttacctcctttgtgaatgcagatgaaaaaa |
254 |
Q |
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| T |
1382595 |
atcgtatggacctgaaatcacacgaatatttagagaacttttatgagattttgttacaaaacctacatatttacctcctttgtgaatgtagatgaaaaaa |
1382694 |
T |
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| Q |
255 |
gaaatgttctctgctc |
270 |
Q |
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| T |
1382695 |
gaaatgttctccgctc |
1382710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 56 - 133
Target Start/End: Original strand, 7317159 - 7317235
Alignment:
| Q |
56 |
tatattgtgaataacatgagtcaagcaggagatttgaagataatatttgtaaacaattaaggttgtaccttcacagga |
133 |
Q |
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| T |
7317159 |
tatattgtgaataacatgagtcaagcaggagatttgaagataatatttggaaac-attaaggttgtaccttcacagga |
7317235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 176
Target Start/End: Original strand, 7039552 - 7039628
Alignment:
| Q |
99 |
tatttgtaaacaattaaggttgtaccttcacaggattccttaaacagacgcttagcatcgtatggacctgaaatcaca |
176 |
Q |
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| T |
7039552 |
tatttgtaaaca-ttacggttgtaccttcacaggattccttaaaaacacactttggatcatatcgacctgaaatcaca |
7039628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 111 - 144
Target Start/End: Original strand, 20521784 - 20521817
Alignment:
| Q |
111 |
attaaggttgtaccttcacaggattccttaaaca |
144 |
Q |
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| T |
20521784 |
attatggttgtaccttcacaggattccttaaaca |
20521817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 213 - 270
Target Start/End: Original strand, 29380921 - 29380978
Alignment:
| Q |
213 |
aaacctacatatttacctcctttgtgaatgcagatgaaaaaagaaatgttctctgctc |
270 |
Q |
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| T |
29380921 |
aaacctacatatttaccttctctgtcattgtagatgaaaaaagaaaagttctccgctc |
29380978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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