View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0846_low_17 (Length: 596)

Name: NF0846_low_17
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0846_low_17
NF0846_low_17
[»] chr1 (4 HSPs)
chr1 (68-264)||(3222945-3223143)
chr1 (68-264)||(26542354-26542552)
chr1 (78-264)||(38010667-38010865)
chr1 (68-132)||(1796905-1796968)
[»] chr8 (6 HSPs)
chr8 (354-523)||(36652717-36652897)
chr8 (73-264)||(39643161-39643354)
chr8 (68-264)||(39643478-39643676)
chr8 (531-581)||(36652391-36652441)
chr8 (109-245)||(14101144-14101284)
chr8 (29-68)||(36652892-36652931)
[»] chr7 (5 HSPs)
chr7 (82-264)||(34144464-34144649)
chr7 (68-239)||(3270607-3270780)
chr7 (68-166)||(24976973-24977071)
chr7 (68-166)||(24977303-24977401)
chr7 (68-264)||(1774587-1774794)
[»] chr5 (1 HSPs)
chr5 (69-264)||(21045728-21045929)
[»] chr6 (2 HSPs)
chr6 (68-190)||(6889395-6889518)
chr6 (82-168)||(9664978-9665063)
[»] chr4 (2 HSPs)
chr4 (91-166)||(27065614-27065689)
chr4 (91-166)||(27086717-27086792)
[»] scaffold0161 (1 HSPs)
scaffold0161 (82-145)||(22709-22772)
[»] chr3 (1 HSPs)
chr3 (120-190)||(36323758-36323828)


Alignment Details
Target: chr1 (Bit Score: 148; Significance: 8e-78; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 68 - 264
Target Start/End: Complemental strand, 3223143 - 3222945
Alignment:
Q  68 tgttagagagttatattagacttaaatgaataatttagctatttagtttaagagtaaaattatattagtttgtctttctttagagttgttgttagttgga 167  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||     
T  3223143 tgttagagagttatattagacttaaatgaataatttagctatttagtttaagagtaaaattatattagtttgtccttcttttgagttgttgctagttggg 3223044  T
Q  168 ctttaagtttggcctttagtcttaagcccattaggattaccatccttccta--tatagtgtctttgacacactatccaaaggaatgaaatgaatcaaaa 264  Q
    | ||||||| || |||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||||||  |||||||||||||||||    
T  3223043 ccttaagttaggtctttagtcttaagcccattagggttaccatccttcctatatatagtgtctttgacacactatccaaatcaatgaaatgaatcaaaa 3222945  T

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Target: chr1; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 68 - 264
Target Start/End: Complemental strand, 26542552 - 26542354
Alignment:
Q  68 tgttagagagttatattagacttaaatgaataatttagctatttagtttaagagtaaaattatattagtttgtctttctttagagttgttgttagttgga 167  Q
    ||||| ||||| ||||||  | |||||||||||||||| |||||||||| |||||||||||||||||||||||| |||  |  |||||||| |||||||     
T  26542552 tgttaaagagtgatattacgcctaaatgaataatttagttatttagtttcagagtaaaattatattagtttgtccttcactttagttgttgctagttggg 26542453  T
Q  168 ctttaagtttggcctttagtcttaagcccattaggattaccatccttc--ctatatagtgtctttgacacactatccaaaggaatgaaatgaatcaaaa 264  Q
    | |||| || || ||||||||| ||||| |||| | |||| ||  |||   |||||||||||||||||||||||||||||  |||||||||||||||||    
T  26542452 ccttaaattaggtctttagtctcaagccgattaaggttactatgtttcttatatatagtgtctttgacacactatccaaatcaatgaaatgaatcaaaa 26542354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 78 - 264
Target Start/End: Complemental strand, 38010865 - 38010667
Alignment:
Q  78 ttatattagacttaaatgaataatttagctatttagtttaagagtaaaattatattagtttgtctttc-tttagagttgttgttagttgga-ctttaagt 175  Q
    |||||||||||| |||| ||||||||| ||||||| ||||  |||| ||||||||||||||||||||| || ||||||||| ||||||||| ||||||||    
T  38010865 ttatattagactcaaataaataatttacctatttaatttagaagtataattatattagtttgtctttcattgagagttgtttttagttggatctttaagt 38010766  T
Q  176 ttggcctttagtc-ttaagcccattaggattaccatcc-------ttcctat--atagtgtctttgacacactatccaaaggaatgaaatgaatcaaaa 264  Q
    | || |||||||| |||||| ||||||| |||  ||||       |||||||  ||||||||||||||| ||||| ||||  ||| |||||||||||||    
T  38010765 tgggtctttagtctttaagctcattagggttagtatcctttatcattcctatacatagtgtctttgacatactatgcaaatcaatcaaatgaatcaaaa 38010667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 68 - 132
Target Start/End: Original strand, 1796905 - 1796968
Alignment:
Q  68 tgttagagagttatattagacttaaatgaataatttagctatttagtttaagagtaaaattatat 132  Q
    ||||||||||| |||||||||| |||| ||| ||||| ||||||||||| |||||||||||||||    
T  1796905 tgttagagagtgatattagactcaaataaatgatttaactatttagttt-agagtaaaattatat 1796968  T

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Target: chr8 (Bit Score: 131; Significance: 1e-67; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 354 - 523
Target Start/End: Complemental strand, 36652897 - 36652717
Alignment:
Q  354 ctttttcacggtaatattattgcaacaatgttagtaagtatagttagatacgaaatatatgtagaaatgaataacc-----------tccaaaactgcag 442  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||    
T  36652897 ctttgtcacggtaatattattgcaacaatgttagtaagtatagttagatacgaaatatatgtagaaatgaataaccaaatatggtgttccaaaactgcag 36652798  T
Q  443 aatagtcccacatcgtagagttagatgtgaaaaataacatctgtaagaacaaggtaacactactttgttttctccttcata 523  Q
    ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36652797 aattgtcccacatcgtagagttagatgcgaaaaataacatctgtaagaacaaggtaacactactttgttttctccttcata 36652717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 73 - 264
Target Start/End: Original strand, 39643161 - 39643354
Alignment:
Q  73 gagagttatattagacttaaatgaataatttagctatttagtttaagagtaaaattatattagtttgtctttctttagagttgttgttagttggacttta 172  Q
    |||||| | |||||| |||||| ||| |||||| ||| | |||||||| ||||||||||||| ||||||||||  |  |||||||| ||||||| | |||    
T  39643161 gagagtgaaattagatttaaataaatgatttagatatcttgtttaagactaaaattatattattttgtctttcactttagttgttgctagttgggcctta 39643260  T
Q  173 agtttggcctttagtcttaagcccattaggattaccatccttcctata--tagtgtctttgacacactatccaaaggaatgaaatgaatcaaaa 264  Q
    |||| || |||||||||||||||||||||| |||| ||||||||||||  |||||| ||||||||||||||||||  ||| |||||||||||||    
T  39643261 agttaggtctttagtcttaagcccattagggttactatccttcctatatttagtgtttttgacacactatccaaataaatcaaatgaatcaaaa 39643354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 68 - 264
Target Start/End: Complemental strand, 39643676 - 39643478
Alignment:
Q  68 tgttagagagttatattagacttaaatgaataatttagctatttagtttaagagtaaaattatattagtttgtctttctttagagttgttgttagttgga 167  Q
    ||||||||||| | ||||||||||||| ||| |||||| ||| |||||||| ||||||||||||| ||||| ||||||  |  |||||||| |||||||     
T  39643676 tgttagagagtgaaattagacttaaataaatgatttagatatctagtttaaaagtaaaattatatcagtttatctttcacttaagttgttgctagttggg 39643577  T
Q  168 ctttaagtttggcctttagtcttaagcccattaggattaccatccttcc--tatatagtgtctttgacacactatccaaaggaatgaaatgaatcaaaa 264  Q
    | |||| || || ||||||||||||| | |||| | |||| ||| ||||  |||||||||||||||||||||||||||||  ||| |||||||||||||    
T  39643576 ccttaaattaggtctttagtcttaagtctattaaggttactatctttcctatatatagtgtctttgacacactatccaaataaattaaatgaatcaaaa 39643478  T

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Target: chr8; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 531 - 581
Target Start/End: Complemental strand, 36652441 - 36652391
Alignment:
Q  531 atactccctttggtacattttgaagcatgcttgagattaaaatttgttagt 581  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36652441 atactccctttggtacattttgaagcatgcttgagattaaaatttgttagt 36652391  T

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Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 109 - 245
Target Start/End: Original strand, 14101144 - 14101284
Alignment:
Q  109 tttagtttaagagtaaaattatattagtttgtctttctttagagttgttgttagtt-ggactttaagtttggcctttagtc-ttaagcccattaggatta 206  Q
    |||||||||| |||| |||||||||||||||||||||  | |||||||| |||||| || |||||| || ||  ||||||| ||| || ||||||| |||    
T  14101144 tttagtttaaaagtataattatattagtttgtctttcaattgagttgtttttagttgggcctttaaattaggtttttagtctttaggctcattagggtta 14101243  T
Q  207 ccatccttcc--tatatagtgtctttgacacactatccaaa 245  Q
    | |||||| |  |||||||||||||||||||||||||||||    
T  14101244 ctatcctttctatatatagtgtctttgacacactatccaaa 14101284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 29 - 68
Target Start/End: Complemental strand, 36652931 - 36652892
Alignment:
Q  29 agtgttggtttcaagataacgttctttagtgaggctttgt 68  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  36652931 agtgttggtttcaagataacgttctttagtgaggctttgt 36652892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 2e-41; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 82 - 264
Target Start/End: Original strand, 34144464 - 34144649
Alignment:
Q  82 attagacttaaatgaataatttagctatttagtttaagagtaaaattatattagtttgtctttctttagagttgttgttagttggactttaagtttggcc 181  Q
    ||||| || ||||||||||||||| ||| |||||||||||||| ||||||||||||| ||||||  | ||||||||| ||||||| | ||||||| || |    
T  34144464 attaggctcaaatgaataatttagatatctagtttaagagtaagattatattagtttatctttcacttgagttgttgctagttgggccttaagttaggtc 34144563  T
Q  182 tttagtc-ttaagcccattaggattaccatccttc--ctatatagtgtctttgacacactatccaaaggaatgaaatgaatcaaaa 264  Q
    ||||||| ||| |||||||||| |||| ||| |||   ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  34144564 tttagtctttaggcccattagggttactatcattcttatatatagtgtctttgacacaccatccaaaggaatgaaatgaatcaaaa 34144649  T

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Target: chr7; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 68 - 239
Target Start/End: Original strand, 3270607 - 3270780
Alignment:
Q  68 tgttagagagttatattagacttaaatgaataatttagctatttagtttaagagtaaaattatattagtttgtctttctttagagttgttgttagttgga 167  Q
    ||||||| ||| | ||||||||||||| ||| |||||| ||||||| |||||| |||||||||||||||| |||||||  | ||||| |||||||||||     
T  3270607 tgttagatagtgaaattagacttaaataaatgatttagatatttagcttaagattaaaattatattagttggtctttcacttgagttattgttagttggg 3270706  T
Q  168 ctttaagtttggcctttagtcttaagcccattaggattaccatccttcc--tatatagtgtctttgacacacta 239  Q
    | ||| ||| || |||||||||||||||||||||| |||| ||||||||  |||||| ||||||||||||||||    
T  3270707 ccttatgttaggtctttagtcttaagcccattagggttactatccttcctatatataatgtctttgacacacta 3270780  T

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Target: chr7; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 68 - 166
Target Start/End: Original strand, 24976973 - 24977071
Alignment:
Q  68 tgttagagagttatattagacttaaatgaataatttagctatttagtttaagagtaaaattatattagtttgtctttctttagagttgttgttagttgg 166  Q
    |||||||||||   |||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||  |||||||    
T  24976973 tgttagagagtgcaattagatttaaatgaataatttagttatttagtttaagagcaaaattatattagtttgtctttcttttgagttgtttctagttgg 24977071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 68 - 166
Target Start/End: Complemental strand, 24977401 - 24977303
Alignment:
Q  68 tgttagagagttatattagacttaaatgaataatttagctatttagtttaagagtaaaattatattagtttgtctttctttagagttgttgttagttgg 166  Q
    |||||||||||   |||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||  |||||||    
T  24977401 tgttagagagtgcaattagatttcaatgaataatttagctatttagtttaagagcaaaattatattagtttgtctttcttttgagttgtttctagttgg 24977303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 68 - 264
Target Start/End: Complemental strand, 1774794 - 1774587
Alignment:
Q  68 tgttagagagttatattagacttaaatgaataatttagctatttagtttaagagtaaaattatattagtttgtctttctttagagttgttgttagtt-gg 166  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||||||  |||| ||  || |||||||||||||| ||  ||||||| |||||| ||    
T  1774794 tgttagagagtgatattagactgaaatgaataatttagctatttagtttataagtataagaatgttagtttgtctttcctttaagttgttattagttggg 1774695  T
Q  167 actttaagtttggcctttagtc-ttaagcccattaggattac-------catccttcc--tatatagtgtctttgacacactatccaaaggaatgaaatg 256  Q
     ||||||||| ||  ||||||| ||| |||| ||||| ||||        |||  |||  |||||||||| ||||||||||||| ||||||||| |||||    
T  1774694 cctttaagttaggtatttagtctttaggcccgttagggttactatgcattatcactcctatatatagtgtgtttgacacactattcaaaggaatcaaatg 1774595  T
Q  257 aatcaaaa 264  Q
    ||||||||    
T  1774594 aatcaaaa 1774587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 69 - 264
Target Start/End: Original strand, 21045728 - 21045929
Alignment:
Q  69 gttagagagttatattagacttaaatgaataatttagctatttagtttaagagtaaaattata---ttagtttgtctttctttagagttgttgttagttg 165  Q
    |||||||||| | ||||||||||||| ||| || | | ||| |||||||||||||||||||||   ||||||||||||||  | ||||||||| | ||||    
T  21045728 gttagagagtgaaattagacttaaataaatgatgttgatatctagtttaagagtaaaattatactattagtttgtctttcgcttgagttgttgctcgttg 21045827  T
Q  166 gactttaagtttggcctttagtcttaag-cccattaggattaccatccttcctatata--gtgtctttgacacactatccaaaggaatgaaatgaatcaa 262  Q
    ||| ||||||| || || ||||||| || ||||||||| |||| ||| ||||||||||  |||| ||||||||||||||||||  ||| |||||||||||    
T  21045828 gaccttaagttaggtctgtagtctttaggcccattagggttacgatcattcctatatatagtgtttttgacacactatccaaatcaataaaatgaatcaa 21045927  T
Q  263 aa 264  Q
    ||    
T  21045928 aa 21045929  T

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Target: chr6 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 68 - 190
Target Start/End: Original strand, 6889395 - 6889518
Alignment:
Q  68 tgttagagagttatattagacttaaatgaataatttagctatttagtttaagagtaaaattatattagtttgtctttctttagagttgttgttagttgga 167  Q
    |||||||||||   | |||||| |||| ||||||||||||||||||||||  ||||||||||| |||||||||||||| || ||||||||||||||||||    
T  6889395 tgttagagagtgcaactagactcaaataaataatttagctatttagtttataagtaaaattatgttagtttgtctttcctttgagttgttgttagttgga 6889494  T
Q  168 -ctttaagtttggcctttagtctt 190  Q
     ||||||||| || ||||||||||    
T  6889495 cctttaagttgggtctttagtctt 6889518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 82 - 168
Target Start/End: Complemental strand, 9665063 - 9664978
Alignment:
Q  82 attagacttaaatgaataatttagctatttagtttaagagtaaaattatattagtttgtctttctttagagttgttgttagttggac 168  Q
    |||||| | |||| ||||||||||||||||| ||||  ||||||||||||||||||||||||||||| || ||||| ||||||||||    
T  9665063 attagattaaaataaataatttagctatttaatttagaagtaaaattatattagtttgtctttcttt-gatttgtttttagttggac 9664978  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 91 - 166
Target Start/End: Original strand, 27065614 - 27065689
Alignment:
Q  91 aaatgaataatttagctatttagtttaagagtaaaattatattagtttgtctttctttagagttgttgttagttgg 166  Q
    |||| |||||||||| |||||| ||||  ||||||||||||||||||| |||||  || ||||||||| |||||||    
T  27065614 aaataaataatttagatatttaatttataagtaaaattatattagtttatcttttatttgagttgttgctagttgg 27065689  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 91 - 166
Target Start/End: Original strand, 27086717 - 27086792
Alignment:
Q  91 aaatgaataatttagctatttagtttaagagtaaaattatattagtttgtctttctttagagttgttgttagttgg 166  Q
    |||| |||||||||| |||||| ||||  ||||||||||||||||||| |||||  || ||||||||| |||||||    
T  27086717 aaataaataatttagatatttaatttataagtaaaattatattagtttatcttttatttgagttgttgctagttgg 27086792  T

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Target: scaffold0161 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 145
Target Start/End: Original strand, 22709 - 22772
Alignment:
Q  82 attagacttaaatgaataatttagctatttagtttaagagtaaaattatattagtttgtctttc 145  Q
    ||||||||||||| ||| |||||| |||| ||||||  ||||||||||| ||||| ||||||||    
T  22709 attagacttaaataaatgatttagatattaagtttataagtaaaattattttagtctgtctttc 22772  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 120 - 190
Target Start/End: Complemental strand, 36323828 - 36323758
Alignment:
Q  120 agtaaaattatattagtttgtctttctttagagttgttgttagttggactttaagtttggcctttagtctt 190  Q
    ||||||||||||||| |||||||||| || ||||||||| ||||||  | || |||| || ||||||||||    
T  36323828 agtaaaattatattaatttgtctttcctttgagttgttgctagttgagccttgagttaggtctttagtctt 36323758  T

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