View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0846_low_172 (Length: 268)

Name: NF0846_low_172
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0846_low_172
NF0846_low_172
[»] chr3 (32 HSPs)
chr3 (174-255)||(48179094-48179175)
chr3 (2-97)||(40159719-40159814)
chr3 (1-83)||(48178947-48179029)
chr3 (2-83)||(11335195-11335276)
chr3 (2-83)||(41369676-41369757)
chr3 (2-83)||(51032519-51032600)
chr3 (212-255)||(48179478-48179521)
chr3 (212-255)||(48179824-48179867)
chr3 (2-83)||(31017290-31017370)
chr3 (212-253)||(48179305-48179346)
chr3 (31-83)||(13724332-13724384)
chr3 (212-255)||(48179651-48179694)
chr3 (8-83)||(50745457-50745532)
chr3 (27-83)||(52678511-52678567)
chr3 (36-83)||(7949885-7949932)
chr3 (2-101)||(18713682-18713781)
chr3 (38-97)||(50025614-50025673)
chr3 (36-83)||(55344223-55344270)
chr3 (27-81)||(12762861-12762915)
chr3 (41-83)||(39172783-39172825)
chr3 (174-204)||(40159879-40159909)
chr3 (37-83)||(43900869-43900915)
chr3 (37-74)||(25542899-25542936)
chr3 (37-74)||(31007280-31007317)
chr3 (26-83)||(39350486-39350543)
chr3 (38-83)||(47988414-47988459)
chr3 (38-83)||(47997701-47997746)
chr3 (38-83)||(48006988-48007033)
chr3 (49-97)||(43460471-43460519)
chr3 (174-202)||(47988526-47988554)
chr3 (174-202)||(47997813-47997841)
chr3 (174-202)||(48007100-48007128)
[»] chr5 (11 HSPs)
chr5 (2-83)||(36415955-36416036)
chr5 (2-83)||(21023395-21023476)
chr5 (14-83)||(25038177-25038246)
chr5 (2-83)||(32425049-32425130)
chr5 (2-83)||(285323-285404)
chr5 (2-83)||(15290914-15290995)
chr5 (37-83)||(7077267-7077313)
chr5 (39-97)||(1108081-1108139)
chr5 (21-83)||(27340966-27341028)
chr5 (35-83)||(32873075-32873123)
chr5 (39-83)||(41192684-41192728)
[»] chr4 (35 HSPs)
chr4 (2-83)||(39880923-39881004)
chr4 (2-83)||(29406930-29407011)
chr4 (2-87)||(4489692-4489777)
chr4 (2-83)||(30890178-30890259)
chr4 (14-83)||(51540752-51540821)
chr4 (2-83)||(53356970-53357051)
chr4 (14-83)||(1562441-1562510)
chr4 (2-83)||(55996517-55996598)
chr4 (14-80)||(17805552-17805618)
chr4 (14-83)||(12241155-12241223)
chr4 (39-83)||(46363910-46363954)
chr4 (174-212)||(12241050-12241088)
chr4 (49-99)||(51296117-51296167)
chr4 (14-83)||(25725599-25725668)
chr4 (14-83)||(43759085-43759154)
chr4 (39-83)||(42177980-42178024)
chr4 (27-83)||(43358710-43358766)
chr4 (36-83)||(33820264-33820310)
chr4 (25-87)||(35694506-35694571)
chr4 (174-204)||(9472554-9472584)
chr4 (36-74)||(20956509-20956547)
chr4 (37-91)||(22071587-22071641)
chr4 (174-204)||(33820377-33820407)
chr4 (37-83)||(46844169-46844215)
chr4 (37-83)||(56025353-56025399)
chr4 (38-83)||(40756018-40756063)
chr4 (37-81)||(389586-389630)
chr4 (178-210)||(4974105-4974137)
chr4 (176-204)||(25523241-25523269)
chr4 (178-206)||(36110132-36110160)
chr4 (35-83)||(36812329-36812377)
chr4 (178-206)||(43511692-43511720)
chr4 (3-79)||(45274364-45274440)
chr4 (35-83)||(48743807-48743855)
chr4 (27-83)||(55596046-55596102)
[»] chr8 (26 HSPs)
chr8 (2-83)||(40719537-40719618)
chr8 (2-83)||(39153577-39153658)
chr8 (2-83)||(9550316-9550397)
chr8 (2-79)||(31806400-31806477)
chr8 (14-102)||(30608615-30608703)
chr8 (9-83)||(35819034-35819108)
chr8 (14-83)||(9048221-9048290)
chr8 (27-83)||(11089673-11089730)
chr8 (37-98)||(30129491-30129552)
chr8 (2-83)||(34996253-34996334)
chr8 (19-83)||(4169829-4169893)
chr8 (49-83)||(11879430-11879464)
chr8 (49-83)||(11896846-11896880)
chr8 (37-83)||(21273638-21273684)
chr8 (27-97)||(27631030-27631100)
chr8 (37-87)||(43602351-43602401)
chr8 (178-207)||(1646253-1646282)
chr8 (14-83)||(16808678-16808747)
chr8 (174-203)||(34494679-34494708)
chr8 (26-83)||(38504267-38504324)
chr8 (27-83)||(9431203-9431259)
chr8 (39-83)||(36497758-36497802)
chr8 (178-206)||(41776184-41776212)
chr8 (21-93)||(42651007-42651079)
chr8 (37-73)||(43587748-43587784)
chr8 (172-204)||(43715875-43715907)
[»] chr7 (19 HSPs)
chr7 (2-83)||(21153149-21153230)
chr7 (8-83)||(27075565-27075640)
chr7 (8-83)||(27202671-27202746)
chr7 (2-83)||(36920882-36920963)
chr7 (8-83)||(42640940-42641015)
chr7 (19-83)||(44596054-44596118)
chr7 (2-83)||(33212123-33212204)
chr7 (35-97)||(2756845-2756907)
chr7 (25-83)||(42276189-42276247)
chr7 (2-83)||(27330920-27331001)
chr7 (38-83)||(6822464-6822509)
chr7 (27-99)||(37149393-37149465)
chr7 (50-93)||(23329996-23330039)
chr7 (49-87)||(34304620-34304658)
chr7 (174-204)||(42276091-42276121)
chr7 (44-85)||(28081721-28081762)
chr7 (26-79)||(30769576-30769629)
chr7 (39-83)||(35212887-35212931)
chr7 (49-89)||(47905056-47905096)
[»] chr6 (14 HSPs)
chr6 (2-83)||(26391176-26391257)
chr6 (14-79)||(27102200-27102266)
chr6 (14-79)||(27144022-27144088)
chr6 (37-101)||(2881412-2881476)
chr6 (3-87)||(15098831-15098915)
chr6 (27-91)||(27334953-27335017)
chr6 (27-91)||(27395693-27395757)
chr6 (38-83)||(13658401-13658446)
chr6 (16-76)||(8778779-8778839)
chr6 (27-87)||(32784831-32784891)
chr6 (26-83)||(28883663-28883720)
chr6 (37-97)||(2862155-2862215)
chr6 (37-97)||(3800677-3800737)
chr6 (27-83)||(17835709-17835765)
[»] chr1 (23 HSPs)
chr1 (14-83)||(10302248-10302317)
chr1 (2-83)||(11570256-11570337)
chr1 (14-83)||(32811769-32811838)
chr1 (25-83)||(21728150-21728208)
chr1 (14-83)||(8670169-8670238)
chr1 (14-83)||(24136825-24136894)
chr1 (14-83)||(44671941-44672010)
chr1 (14-83)||(12708193-12708262)
chr1 (14-83)||(12717738-12717807)
chr1 (14-83)||(42615954-42616023)
chr1 (14-83)||(51848979-51849048)
chr1 (49-85)||(7503560-7503596)
chr1 (27-83)||(35043638-35043694)
chr1 (38-85)||(18540984-18541031)
chr1 (37-83)||(25302573-25302619)
chr1 (21-83)||(40053003-40053065)
chr1 (174-204)||(45042261-45042291)
chr1 (14-83)||(950350-950419)
chr1 (37-74)||(5383865-5383902)
chr1 (26-87)||(8905821-8905882)
chr1 (174-203)||(15182624-15182653)
chr1 (178-210)||(26585218-26585250)
chr1 (27-83)||(50777341-50777397)
[»] scaffold0024 (1 HSPs)
scaffold0024 (2-83)||(92045-92126)
[»] chr2 (18 HSPs)
chr2 (2-89)||(4723657-4723744)
chr2 (8-83)||(43057562-43057637)
chr2 (27-97)||(43356401-43356471)
chr2 (14-83)||(41868274-41868343)
chr2 (14-83)||(44059498-44059567)
chr2 (21-83)||(17917486-17917548)
chr2 (35-83)||(13466001-13466049)
chr2 (27-83)||(30413650-30413706)
chr2 (27-83)||(39744512-39744568)
chr2 (38-97)||(1151612-1151671)
chr2 (36-83)||(6851586-6851633)
chr2 (38-97)||(35518358-35518417)
chr2 (174-204)||(23045093-23045123)
chr2 (21-83)||(37827697-37827759)
chr2 (38-99)||(9377687-9377748)
chr2 (38-83)||(31635739-31635784)
chr2 (178-206)||(7428431-7428459)
chr2 (49-85)||(32755773-32755809)
[»] scaffold0001 (1 HSPs)
scaffold0001 (14-83)||(404845-404914)
[»] scaffold0036 (1 HSPs)
scaffold0036 (14-83)||(18101-18169)
[»] scaffold0054 (1 HSPs)
scaffold0054 (27-83)||(31518-31574)


Alignment Details
Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 174 - 255
Target Start/End: Original strand, 48179094 - 48179175
Alignment:
Q  174 ttagaaaatagttgtacaaatatcatttctcgtaataattattgctattccaaaatcatacaatttgtaataatcagtgtct 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  48179094 ttagaaaatagttgtacaaatatcatttctcgtaataattattgctattccaaaatcatacaatttggaataatcagtgtct 48179175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 2 - 97
Target Start/End: Original strand, 40159719 - 40159814
Alignment:
Q  2 agtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagagaaagagagagagaga 97  Q
    ||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  40159719 agtgatatatgtacaactctttggtacaactttcatgacaactttggttttctctcttttgattggtcaaaaataatagagagagagagagagaga 40159814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 48178947 - 48179029
Alignment:
Q  1 aagtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    |||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||    
T  48178947 aagtgatatatgcacaactctttggtacaattttcatgacaattttagttttctctctttttattggttaaaaataatagaga 48179029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 83
Target Start/End: Original strand, 11335195 - 11335276
Alignment:
Q  2 agtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    ||||| ||||| ||||||||||||||||| ||| || |||||||| |||||||||| |||||||||| ||||||||||||||    
T  11335195 agtgatatatgtacaactctttggtacaacttttattacaactttagttttctctcatttgattggtcaaaaataatagaga 11335276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 83
Target Start/End: Complemental strand, 41369757 - 41369676
Alignment:
Q  2 agtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    ||||| ||||| |||  |||||||||||| ||| ||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  41369757 agtgatatatgtacacttctttggtacaacttttatgacaactttagttttctctcttttgattggtcaaaaataatagaga 41369676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 83
Target Start/End: Original strand, 51032519 - 51032600
Alignment:
Q  2 agtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    ||||| ||||| |||||| |||  ||||| |||||||||||||||  |||||| ||||||||||||| ||||||||||||||    
T  51032519 agtgatatatgtacaacttttttatacaactttcatgacaactttaattttctatcttttgattggtcaaaaataatagaga 51032600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 255
Target Start/End: Original strand, 48179478 - 48179521
Alignment:
Q  212 ttattgctattccaaaatcatacaatttgtaataatcagtgtct 255  Q
    ||||||||||||||||||||||||||||| ||||||||||||||    
T  48179478 ttattgctattccaaaatcatacaatttggaataatcagtgtct 48179521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 255
Target Start/End: Original strand, 48179824 - 48179867
Alignment:
Q  212 ttattgctattccaaaatcatacaatttgtaataatcagtgtct 255  Q
    ||||||||||||||||||||||||||||| ||||||||||||||    
T  48179824 ttattgctattccaaaatcatacaatttggaataatcagtgtct 48179867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 83
Target Start/End: Original strand, 31017290 - 31017370
Alignment:
Q  2 agtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    ||||| ||||| ||||||||||| || | || | |||||||||||| ||||||||| |||||||||| ||||||||||||||    
T  31017290 agtgatatatgtacaactctttgataaacttct-atgacaactttgattttctctcatttgattggtaaaaaataatagaga 31017370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 253
Target Start/End: Original strand, 48179305 - 48179346
Alignment:
Q  212 ttattgctattccaaaatcatacaatttgtaataatcagtgt 253  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  48179305 ttattgctattccaaaatcatacaatttggaataatcagtgt 48179346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 13724332 - 13724384
Alignment:
Q  31 ttttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    ||||||||||||||||| ||||||||||||| |||||| |||||||| |||||    
T  13724332 ttttcatgacaactttgattttctctcttttaattggtcaaaaataacagaga 13724384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 255
Target Start/End: Original strand, 48179651 - 48179694
Alignment:
Q  212 ttattgctattccaaaatcatacaatttgtaataatcagtgtct 255  Q
    ||||||||||||||||||||||||||||| |||||| |||||||    
T  48179651 ttattgctattccaaaatcatacaatttggaataattagtgtct 48179694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 50745532 - 50745457
Alignment:
Q  8 atatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    ||||| ||||||||||||||||| ||  |||||||||||  || |||||| |||||||||| ||| ||||||||||    
T  50745532 atatgtacaactctttggtacaacttctatgacaactttaattgtctctcatttgattggtaaaagataatagaga 50745457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 52678511 - 52678567
Alignment:
Q  27 acaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    |||| |||||||| ||||||| |||||||| ||||||||||||||||  ||||||||    
T  52678511 acaactttcatgataactttgtttttctctattttgattggttaaaatcaatagaga 52678567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 83
Target Start/End: Complemental strand, 7949932 - 7949885
Alignment:
Q  36 atgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    |||||||||||  |||||||||||||||||||||||||| ||| ||||    
T  7949932 atgacaactttatttttctctcttttgattggttaaaaaaaatggaga 7949885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 101
Target Start/End: Complemental strand, 18713781 - 18713682
Alignment:
Q  2 agtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagagaaagagagagagagaaaga 101  Q
    ||||| ||||| |||||  ||||| |||||||| |||||||||||  || |||||||| | ||||||  ||||||||||||| ||| | ||| |||||||    
T  18713781 agtgatatatgtacaaccatttggaacaattttaatgacaactttcattctctctcttctcattggtccaaaataatagagagagaaaaagaaagaaaga 18713682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 38 - 97
Target Start/End: Original strand, 50025614 - 50025673
Alignment:
Q  38 gacaactttggttttctctcttttgattggttaaaaataatagagaaagagagagagaga 97  Q
    |||||||||| | ||||||||| | |||||| ||||| |||||||| |||||||||||||    
T  50025614 gacaactttgttgttctctcttctcattggtcaaaaacaatagagagagagagagagaga 50025673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 83
Target Start/End: Original strand, 55344223 - 55344270
Alignment:
Q  36 atgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    |||||||||||  ||||||||||||| |||||||||||| ||||||||    
T  55344223 atgacaacttttcttttctctcttttcattggttaaaaacaatagaga 55344270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 12762861 - 12762915
Alignment:
Q  27 acaattttcatgacaactttggttttctctcttttgattggttaaaaataataga 81  Q
    |||||||| |||||||||||  ||||||||||||| |||||| ||||| ||||||    
T  12762861 acaatttttatgacaactttctttttctctctttttattggtaaaaaacaataga 12762915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 83
Target Start/End: Complemental strand, 39172825 - 39172783
Alignment:
Q  41 aactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    |||||||||||||||| |||| |||||| ||||||||||||||    
T  39172825 aactttggttttctctattttaattggtcaaaaataatagaga 39172783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 204
Target Start/End: Original strand, 40159879 - 40159909
Alignment:
Q  174 ttagaaaatagttgtacaaatatcatttctc 204  Q
    |||||||||||||||||||||||||||||||    
T  40159879 ttagaaaatagttgtacaaatatcatttctc 40159909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 43900915 - 43900869
Alignment:
Q  37 tgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    ||||||||||| ||||||||||| | |||||||||||||||| ||||    
T  43900915 tgacaactttgtttttctctcttcttattggttaaaaataatggaga 43900869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 74
Target Start/End: Original strand, 25542899 - 25542936
Alignment:
Q  37 tgacaactttggttttctctcttttgattggttaaaaa 74  Q
    ||||||||||||||| |||||||||||||||| |||||    
T  25542899 tgacaactttggtttcctctcttttgattggtcaaaaa 25542936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 74
Target Start/End: Original strand, 31007280 - 31007317
Alignment:
Q  37 tgacaactttggttttctctcttttgattggttaaaaa 74  Q
    ||||||||||| ||| ||||||||||||||||||||||    
T  31007280 tgacaactttgttttcctctcttttgattggttaaaaa 31007317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 39350486 - 39350543
Alignment:
Q  26 tacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    ||||||||| |||| || ||| |||||||||  |||||||||| ||||||||||||||    
T  39350486 tacaatttttatgataattttagttttctcttatttgattggtcaaaaataatagaga 39350543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 47988414 - 47988459
Alignment:
Q  38 gacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    |||||||||| ||||||||  |||||||||| ||||||||||||||    
T  47988414 gacaactttgattttctcttctttgattggtcaaaaataatagaga 47988459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 47997701 - 47997746
Alignment:
Q  38 gacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    |||||||||| ||||||||  |||||||||| ||||||||||||||    
T  47997701 gacaactttgattttctcttctttgattggtcaaaaataatagaga 47997746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 48006988 - 48007033
Alignment:
Q  38 gacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    |||||||||| ||||||||  |||||||||| ||||||||||||||    
T  48006988 gacaactttgattttctcttctttgattggtcaaaaataatagaga 48007033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 43460519 - 43460471
Alignment:
Q  49 ttttctctcttttgattggttaaaaataatagagaaagagagagagaga 97  Q
    ||||||||||| | |||||| ||||| |||||||| |||||||||||||    
T  43460519 ttttctctcttcttattggtcaaaaacaatagagagagagagagagaga 43460471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 202
Target Start/End: Original strand, 47988526 - 47988554
Alignment:
Q  174 ttagaaaatagttgtacaaatatcatttc 202  Q
    |||||||||||||||||||||||||||||    
T  47988526 ttagaaaatagttgtacaaatatcatttc 47988554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 202
Target Start/End: Original strand, 47997813 - 47997841
Alignment:
Q  174 ttagaaaatagttgtacaaatatcatttc 202  Q
    |||||||||||||||||||||||||||||    
T  47997813 ttagaaaatagttgtacaaatatcatttc 47997841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 202
Target Start/End: Original strand, 48007100 - 48007128
Alignment:
Q  174 ttagaaaatagttgtacaaatatcatttc 202  Q
    |||||||||||||||||||||||||||||    
T  48007100 ttagaaaatagttgtacaaatatcatttc 48007128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 7e-27; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 2 - 83
Target Start/End: Original strand, 36415955 - 36416036
Alignment:
Q  2 agtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    ||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  36415955 agtgatatatgtacaactctttggtacaactttcatgacaactttggttttctctcttttgattggtcaaaaatactagaga 36416036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 2 - 83
Target Start/End: Complemental strand, 21023476 - 21023395
Alignment:
Q  2 agtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    ||||| ||||| |||||||||||||||||||||||||| |||||| ||||||| |||||||||| || ||||||||||||||    
T  21023476 agtgatatatgtacaactctttggtacaattttcatgataactttagttttctatcttttgatttgtcaaaaataatagaga 21023395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 25038246 - 25038177
Alignment:
Q  14 acaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    ||||||||||||||||| |||||||| |||||| ||||| ||||||||||||||||||||||||||||||    
T  25038246 acaactctttggtacaactttcatgataactttagttttatctcttttgattggttaaaaataatagaga 25038177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 83
Target Start/End: Complemental strand, 32425130 - 32425049
Alignment:
Q  2 agtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    ||||| ||||| |||||| |||||||||| |||||||||||||||  |||||| ||||||||||||| ||||||||||||||    
T  32425130 agtgacatatgtacaactatttggtacaactttcatgacaactttaattttctatcttttgattggtcaaaaataatagaga 32425049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 83
Target Start/End: Complemental strand, 285404 - 285323
Alignment:
Q  2 agtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    ||||| ||||| |||||||||| |||||| ||||||| |||||||  |||||| ||||||||||||| |||||||| |||||    
T  285404 agtgatatatgtacaactctttagtacaactttcatgccaactttaattttctatcttttgattggtcaaaaataacagaga 285323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 83
Target Start/End: Original strand, 15290914 - 15290995
Alignment:
Q  2 agtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    ||||| ||||| ||||||||||||||||| ||| || | || |||  ||||||| |||||||||||| ||||||||||||||    
T  15290914 agtgatatatgtacaactctttggtacaacttttataataattttaattttctcccttttgattggtcaaaaataatagaga 15290995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 7077267 - 7077313
Alignment:
Q  37 tgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    ||||||||||| |||||||||||||||||||| ||||||||| ||||    
T  7077267 tgacaactttgtttttctctcttttgattggtcaaaaataatggaga 7077313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 1108139 - 1108081
Alignment:
Q  39 acaactttggttttctctcttttgattggttaaaaataatagagaaagagagagagaga 97  Q
    ||||||||| | ||||||||| | |||||| ||||| |||||||| |||||||||||||    
T  1108139 acaactttgttgttctctcttctcattggtcaaaaacaatagagagagagagagagaga 1108081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 27341028 - 27340966
Alignment:
Q  21 tttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    |||||||||||||| |||||||||||  ||| ||||||||| ||||||  |||| ||||||||    
T  27341028 tttggtacaattttgatgacaactttcatttgctctctttttattggtccaaaacaatagaga 27340966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 32873075 - 32873123
Alignment:
Q  35 catgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    ||||||||||||| |||||||| ||||||||||| ||||  ||||||||    
T  32873075 catgacaactttgtttttctctattttgattggtcaaaatcaatagaga 32873123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 83
Target Start/End: Complemental strand, 41192728 - 41192684
Alignment:
Q  39 acaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    ||||||||| |||||||||||||||||||| ||||| ||| ||||    
T  41192728 acaactttgtttttctctcttttgattggtcaaaaacaatggaga 41192684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 2 - 83
Target Start/End: Original strand, 39880923 - 39881004
Alignment:
Q  2 agtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    ||||| ||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  39880923 agtgatatatgtacaactctttcgtacaactttcatgacaactttggttttctctcttttgattggtcaaaaataatagaga 39881004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 83
Target Start/End: Original strand, 29406930 - 29407011
Alignment:
Q  2 agtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    ||||| ||||| ||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||| ||||||||||||||    
T  29406930 agtgatatatgtacaactctttggtacaactttcatgacaattttggttttctctattttgattggtaaaaaataatagaga 29407011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 2 - 87
Target Start/End: Original strand, 4489692 - 4489777
Alignment:
Q  2 agtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagagaaaga 87  Q
    ||||| ||||| ||||||||||||||||| |||||||||||||||  |||||| ||||||| ||||| ||||||||||||||||||    
T  4489692 agtgatatatgtacaactctttggtacaactttcatgacaactttaattttctatcttttggttggtcaaaaataatagagaaaga 4489777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 2 - 83
Target Start/End: Original strand, 30890178 - 30890259
Alignment:
Q  2 agtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    ||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||| |||| || |||||||||||    
T  30890178 agtgatatatgtacaactctttggtacaatttttatgacaactttggttttctctattttgactggtcaagaataatagaga 30890259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 51540752 - 51540821
Alignment:
Q  14 acaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    ||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  51540752 acaactctttggtacaacttttatgacaattttggttttctctcttttgattggtcaaaaataatagaga 51540821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 83
Target Start/End: Original strand, 53356970 - 53357051
Alignment:
Q  2 agtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    ||||| ||||| ||||||||||||||||| ||  |||||||||||| || |||||| |||||||||| ||||||||||||||    
T  53356970 agtgatatatgtacaactctttggtacaacttctatgacaactttgattgtctctcatttgattggtcaaaaataatagaga 53357051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 1562441 - 1562510
Alignment:
Q  14 acaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    |||||| |||||||||||| |   ||||||||||||||||||| ||||||||||| ||||||||||||||    
T  1562441 acaactttttggtacaattctttggacaactttggttttctcttttttgattggtcaaaaataatagaga 1562510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 83
Target Start/End: Complemental strand, 55996598 - 55996517
Alignment:
Q  2 agtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    ||||| ||||| |||||| |||||||||||| | ||||||||||   |||||| ||||||||||||| ||||||||||||||    
T  55996598 agtgatatatgtacaactttttggtacaattataatgacaacttcaattttctatcttttgattggtcaaaaataatagaga 55996517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 17805618 - 17805552
Alignment:
Q  14 acaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatag 80  Q
    |||| |||||||||||||||| |||| || ||||||||| ||||||||||||| | |||||||||||    
T  17805618 acaattctttggtacaatttttatgataattttggttttttctcttttgattgatcaaaaataatag 17805552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 12241223 - 12241155
Alignment:
Q  14 acaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    |||||||||| ||||||  || |||||||||||  ||||||||||||||||||| |||||||||||||||    
T  12241223 acaactcttttgtacaacctttatgacaactttatttttctctcttttgattgg-taaaaataatagaga 12241155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 46363910 - 46363954
Alignment:
Q  39 acaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||    
T  46363910 acaactttggttttctctcttttgattggtcaaaaatactagaga 46363954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 174 - 212
Target Start/End: Complemental strand, 12241088 - 12241050
Alignment:
Q  174 ttagaaaatagttgtacaaatatcatttctcgtaataat 212  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  12241088 ttagaaaatagttgtacaaatatcatttctcttaataat 12241050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 49 - 99
Target Start/End: Original strand, 51296117 - 51296167
Alignment:
Q  49 ttttctctcttttgattggttaaaaataatagagaaagagagagagagaaa 99  Q
    ||||||||||||  |||||| |||||||||||||| |||||||||||||||    
T  51296117 ttttctctctttctattggtcaaaaataatagagagagagagagagagaaa 51296167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 25725599 - 25725668
Alignment:
Q  14 acaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    |||||||||| ||||||  || |||||||||||| |||||| || |||| ||||| ||||||||||||||    
T  25725599 acaactcttttgtacaacctttatgacaactttgtttttctatcatttggttggtcaaaaataatagaga 25725668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 43759085 - 43759154
Alignment:
Q  14 acaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    |||||||||| ||||||  || |||||||| ||| |||||| |||||||||| || ||||||||||||||    
T  43759085 acaactcttttgtacaacctttatgacaaccttgtttttctatcttttgatttgtcaaaaataatagaga 43759154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 42177980 - 42178024
Alignment:
Q  39 acaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    ||||||||| ||||||||||| | |||||||||||||||||||||    
T  42177980 acaactttgtttttctctcttcttattggttaaaaataatagaga 42178024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 43358766 - 43358710
Alignment:
Q  27 acaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    |||||||| |||||||||||| |||||||| ||||||||||| ||||  ||||||||    
T  43358766 acaatttttatgacaactttgtttttctctattttgattggtcaaaatcaatagaga 43358710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 83
Target Start/End: Original strand, 33820264 - 33820310
Alignment:
Q  36 atgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    |||||||||||  ||||||||||||||||||| |||||||||||||||    
T  33820264 atgacaactttatttttctctcttttgattgg-taaaaataatagaga 33820310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 35694506 - 35694571
Alignment:
Q  25 gtacaattttcatgacaactttggttttct---ctcttttgattggttaaaaataatagagaaaga 87  Q
    |||||| ||| ||||||||||||||||| |   |||||||||||||| |||||||||||| |||||    
T  35694506 gtacaacttttatgacaactttggtttttttttctcttttgattggtcaaaaataatagaaaaaga 35694571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 204
Target Start/End: Original strand, 9472554 - 9472584
Alignment:
Q  174 ttagaaaatagttgtacaaatatcatttctc 204  Q
    |||||||||||||||||||||||||||||||    
T  9472554 ttagaaaatagttgtacaaatatcatttctc 9472584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 74
Target Start/End: Original strand, 20956509 - 20956547
Alignment:
Q  36 atgacaactttggttttctctcttttgattggttaaaaa 74  Q
    |||||||||||| |||||||||||||||||||| |||||    
T  20956509 atgacaactttgtttttctctcttttgattggtcaaaaa 20956547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 91
Target Start/End: Complemental strand, 22071641 - 22071587
Alignment:
Q  37 tgacaactttggttttctctcttttgattggttaaaaataatagagaaagagaga 91  Q
    ||||||||||  ||||||||||| | |||||||||||| |||||||| |||||||    
T  22071641 tgacaactttctttttctctcttcttattggttaaaaacaatagagagagagaga 22071587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 204
Target Start/End: Original strand, 33820377 - 33820407
Alignment:
Q  174 ttagaaaatagttgtacaaatatcatttctc 204  Q
    |||||||||||||||||||||||||||||||    
T  33820377 ttagaaaatagttgtacaaatatcatttctc 33820407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 46844169 - 46844215
Alignment:
Q  37 tgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    ||||||||||| ||||||||||||| |||||||||||| ||| ||||    
T  46844169 tgacaactttgtttttctctctttttattggttaaaaacaatggaga 46844215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 56025399 - 56025353
Alignment:
Q  37 tgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    ||||||||||| |||||||||||||||||||| ||||| ||| ||||    
T  56025399 tgacaactttgattttctctcttttgattggtcaaaaacaatggaga 56025353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 83
Target Start/End: Complemental strand, 40756063 - 40756018
Alignment:
Q  38 gacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    |||||||||| ||||||||  |||||||||| ||||||||||||||    
T  40756063 gacaactttgattttctcttctttgattggtcaaaaataatagaga 40756018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 389586 - 389630
Alignment:
Q  37 tgacaactttggttttctctcttttgattggttaaaaataataga 81  Q
    ||||||||||| |||||||| ||||||||||| |||| |||||||    
T  389586 tgacaactttgtttttctctattttgattggtcaaaattaataga 389630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 210
Target Start/End: Complemental strand, 4974137 - 4974105
Alignment:
Q  178 aaaatagttgtacaaatatcatttctcgtaata 210  Q
    ||||||||||||||||||||||||||| |||||    
T  4974137 aaaatagttgtacaaatatcatttctcataata 4974105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 204
Target Start/End: Original strand, 25523241 - 25523269
Alignment:
Q  176 agaaaatagttgtacaaatatcatttctc 204  Q
    |||||||||||||||||||||||||||||    
T  25523241 agaaaatagttgtacaaatatcatttctc 25523269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 206
Target Start/End: Complemental strand, 36110160 - 36110132
Alignment:
Q  178 aaaatagttgtacaaatatcatttctcgt 206  Q
    |||||||||||||||||||||||||||||    
T  36110160 aaaatagttgtacaaatatcatttctcgt 36110132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 36812329 - 36812377
Alignment:
Q  35 catgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    ||||||||||||| |||||||| ||||||||||| ||||  ||||||||    
T  36812329 catgacaactttgtttttctctattttgattggtcaaaatcaatagaga 36812377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 206
Target Start/End: Original strand, 43511692 - 43511720
Alignment:
Q  178 aaaatagttgtacaaatatcatttctcgt 206  Q
    |||||||||||||||||||||||||||||    
T  43511692 aaaatagttgtacaaatatcatttctcgt 43511720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 79
Target Start/End: Complemental strand, 45274440 - 45274364
Alignment:
Q  3 gtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataata 79  Q
    |||| ||||| |||||| ||||| |||| ||| ||||||||| |  ||||||||||||| ||||||  |||||||||    
T  45274440 gtgatatatgtacaactatttgggacaactttgatgacaactctcattttctctcttttcattggtccaaaataata 45274364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 48743855 - 48743807
Alignment:
Q  35 catgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    ||||||||||||| |||||||| ||||||||||| ||||  ||||||||    
T  48743855 catgacaactttgtttttctctattttgattggtcaaaatcaatagaga 48743807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 55596102 - 55596046
Alignment:
Q  27 acaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    |||| |||||||||||||| | |||||||| ||||||||||| ||||  ||||||||    
T  55596102 acaactttcatgacaacttcgtttttctctattttgattggtcaaaatcaatagaga 55596046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 83
Target Start/End: Original strand, 40719537 - 40719618
Alignment:
Q  2 agtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    ||||| ||||| |||||||||| |||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  40719537 agtgatatatgtacaactctttcgtacaacttttatgacaactttggttttctctcttttgattggtcaaaaataatagaga 40719618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 83
Target Start/End: Original strand, 39153577 - 39153658
Alignment:
Q  2 agtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    ||||| ||||| |||||||||| ||| || |||||||| ||||||| |||||||||||||||||||| ||||||||||||||    
T  39153577 agtgatatatgtacaactctttagtataactttcatgataactttgattttctctcttttgattggtcaaaaataatagaga 39153658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 83
Target Start/End: Original strand, 9550316 - 9550397
Alignment:
Q  2 agtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    ||||| ||||| ||||||||||| ||||| |||||||||||||||  |||||| ||||||||| ||| ||||||||||||||    
T  9550316 agtgatatatgtacaactctttgatacaactttcatgacaactttaattttctatcttttgataggtcaaaaataatagaga 9550397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 79
Target Start/End: Complemental strand, 31806477 - 31806400
Alignment:
Q  2 agtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataata 79  Q
    ||||| ||||| | ||||||||||||||| ||| || |||||||| |||||||||| |||||||||| ||||||||||    
T  31806477 agtgatatatgtataactctttggtacaacttttattacaactttagttttctctcatttgattggtaaaaaataata 31806400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 102
Target Start/End: Original strand, 30608615 - 30608703
Alignment:
Q  14 acaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagagaaagagagagagagaaagaa 102  Q
    |||||||||| ||||||  || |||||||||||| |||||| ||||||||||||| |||||||| ||||| ||| | ||| ||||||||    
T  30608615 acaactcttttgtacaacctttatgacaactttgtttttctatcttttgattggtaaaaaataacagagagagaaaaagaaagaaagaa 30608703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 83
Target Start/End: Complemental strand, 35819108 - 35819034
Alignment:
Q  9 tatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    |||| |||||| |||||||||| ||  ||||||| |||| || |||||| |||||||||| ||||||||||||||    
T  35819108 tatgtacaactttttggtacaacttctatgacaattttgattgtctctcatttgattggtcaaaaataatagaga 35819034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 9048221 - 9048290
Alignment:
Q  14 acaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    |||||||||| ||||||  || |||||||||||  || |||||||||||||| || ||||||||||||||    
T  9048221 acaactcttttgtacaacatttatgacaactttatttctctctcttttgatttgtcaaaaataatagaga 9048290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 11089730 - 11089673
Alignment:
Q  27 acaattttcatgacaactttggttttctctcttttgattggtta-aaaataatagaga 83  Q
    ||||||||  ||||||||||| |||||||| ||||||||||||| |||||||||||||    
T  11089730 acaattttggtgacaactttgtttttctcttttttgattggttaaaaaataatagaga 11089673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 98
Target Start/End: Complemental strand, 30129552 - 30129491
Alignment:
Q  37 tgacaactttggttttctctcttttgattggttaaaaataatagagaaagagagagagagaa 98  Q
    ||||||||||| ||||||||||| | |||||| ||||||||| |||||||| ||||| ||||    
T  30129552 tgacaactttgcttttctctcttcttattggtcaaaaataatggagaaagaaagagatagaa 30129491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 83
Target Start/End: Original strand, 34996253 - 34996334
Alignment:
Q  2 agtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    ||||| ||||| |||||| |||||||||| ||| |||||||||||  ||| ||||||||| ||||||   ||||||||||||    
T  34996253 agtgatatatgtacaactatttggtacaactttgatgacaactttcatttgctctcttttcattggtccgaaataatagaga 34996334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 4169893 - 4169829
Alignment:
Q  19 tctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    |||||||||||| ||| || | || ||||||||||||| | ||||||||| ||||||||||||||    
T  4169893 tctttggtacaacttttataataattttggttttctctatcttgattggtaaaaaataatagaga 4169829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 83
Target Start/End: Original strand, 11879430 - 11879464
Alignment:
Q  49 ttttctctcttttgattggttaaaaataatagaga 83  Q
    |||||||||||||||||||||||||||||| ||||    
T  11879430 ttttctctcttttgattggttaaaaataatggaga 11879464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 83
Target Start/End: Original strand, 11896846 - 11896880
Alignment:
Q  49 ttttctctcttttgattggttaaaaataatagaga 83  Q
    |||||||||||||||||||||||||||||| ||||    
T  11896846 ttttctctcttttgattggttaaaaataatggaga 11896880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 21273638 - 21273684
Alignment:
Q  37 tgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    ||||||||||  ||||||||||||| |||||||||||| ||||||||    
T  21273638 tgacaacttttcttttctctcttttcattggttaaaaacaatagaga 21273684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 97
Target Start/End: Complemental strand, 27631100 - 27631030
Alignment:
Q  27 acaattttcatgacaactttggttttctctcttttgattggttaaaaataatagagaaagagagagagaga 97  Q
    |||| ||| ||||||||| |  ||||||||||||| |||||| ||||| ||||||||  ||||||||||||    
T  27631100 acaactttgatgacaactattattttctctcttttcattggtcaaaaacaatagagagggagagagagaga 27631030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 87
Target Start/End: Original strand, 43602351 - 43602401
Alignment:
Q  37 tgacaactttggttttctctcttttgattggttaaaaataatagagaaaga 87  Q
    ||||||||||| || ||||||||||||||||| ||||| |||| |||||||    
T  43602351 tgacaactttgtttctctctcttttgattggtcaaaaacaatatagaaaga 43602401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 207
Target Start/End: Complemental strand, 1646282 - 1646253
Alignment:
Q  178 aaaatagttgtacaaatatcatttctcgta 207  Q
    ||||||||||||||||||||||||||||||    
T  1646282 aaaatagttgtacaaatatcatttctcgta 1646253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 16808747 - 16808678
Alignment:
Q  14 acaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    |||| |||||||| ||| ||| |||||||||||| | ||||||  ||||||| || ||||||||||||||    
T  16808747 acaattctttggttcaacttttatgacaactttgatcttctcttctttgattcgtcaaaaataatagaga 16808678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 203
Target Start/End: Original strand, 34494679 - 34494708
Alignment:
Q  174 ttagaaaatagttgtacaaatatcatttct 203  Q
    ||||||||||||||||||||||||||||||    
T  34494679 ttagaaaatagttgtacaaatatcatttct 34494708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 83
Target Start/End: Complemental strand, 38504324 - 38504267
Alignment:
Q  26 tacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    |||||||||  |||||| |||| |||||||||||||||||||| ||||| ||| ||||    
T  38504324 tacaattttggtgacaattttgtttttctctcttttgattggtcaaaaacaatggaga 38504267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 9431203 - 9431259
Alignment:
Q  27 acaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    |||||||| ||||||| |||| |||||||| ||||||||||| ||||  ||||||||    
T  9431203 acaatttttatgacaattttgtttttctctattttgattggtcaaaatcaatagaga 9431259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 83
Target Start/End: Complemental strand, 36497802 - 36497758
Alignment:
Q  39 acaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    ||||| ||| ||||||||||||| |||||||||||| ||||||||    
T  36497802 acaaccttgtttttctctctttttattggttaaaaacaatagaga 36497758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 206
Target Start/End: Complemental strand, 41776212 - 41776184
Alignment:
Q  178 aaaatagttgtacaaatatcatttctcgt 206  Q
    |||||||||||||||||||||||||||||    
T  41776212 aaaatagttgtacaaatatcatttctcgt 41776184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 93
Target Start/End: Complemental strand, 42651079 - 42651007
Alignment:
Q  21 tttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagagaaagagagaga 93  Q
    |||||||||| |||   |||||| ||| | ||||||||| | |||||||||||| |||||||| |||||||||    
T  42651079 tttggtacaacttttgagacaaccttgttgttctctcttctcattggttaaaaacaatagagagagagagaga 42651007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 43587784 - 43587748
Alignment:
Q  37 tgacaactttggttttctctcttttgattggttaaaa 73  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  43587784 tgacaactttgtttttctctcttttgattggtaaaaa 43587748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 204
Target Start/End: Complemental strand, 43715907 - 43715875
Alignment:
Q  172 ttttagaaaatagttgtacaaatatcatttctc 204  Q
    ||||||||||| |||||||||||||||||||||    
T  43715907 ttttagaaaatggttgtacaaatatcatttctc 43715875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 83
Target Start/End: Complemental strand, 21153230 - 21153149
Alignment:
Q  2 agtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    ||||| ||||| |||||| |||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  21153230 agtgatatatgtacaactttttggtacaactttcatgacaactttgattttctctcttttgattggtcaaaaataatagaga 21153149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 27075640 - 27075565
Alignment:
Q  8 atatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    ||||| ||||||||||||||||| ||| |||| || ||||||||||||||||||||||||| ||||||||||||||    
T  27075640 atatgtacaactctttggtacaacttttatgataattttggttttctctcttttgattggtcaaaaataatagaga 27075565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 27202671 - 27202746
Alignment:
Q  8 atatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    ||||| ||||||||||||||||| ||| |||| || ||||||||||||||||||||||||| ||||||||||||||    
T  27202671 atatgtacaactctttggtacaacttttatgataattttggttttctctcttttgattggtcaaaaataatagaga 27202746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 83
Target Start/End: Complemental strand, 36920963 - 36920882
Alignment:
Q  2 agtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    ||||| ||||| ||||||||||||||||| ||| || ||||||||| ||||||||| |||||||||| ||||||||||||||    
T  36920963 agtgatatatgtacaactctttggtacaacttttattacaactttgattttctctcatttgattggtcaaaaataatagaga 36920882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 42641015 - 42640940
Alignment:
Q  8 atatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    ||||| ||||||||||||||||| ||| |||| ||||||| |||||||| ||||||||||| ||||||||||||||    
T  42641015 atatgtacaactctttggtacaacttttatgataactttgattttctcttttttgattggtcaaaaataatagaga 42640940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 44596054 - 44596118
Alignment:
Q  19 tctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    |||||||||||| ||| |||||||||||||||||||||| |||||||||| ||||||| ||||||    
T  44596054 tctttggtacaaattttatgacaactttggttttctctcatttgattggtcaaaaatattagaga 44596118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 83
Target Start/End: Complemental strand, 33212204 - 33212123
Alignment:
Q  2 agtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    ||||| ||||| ||||||||||||||||| ||  |||||||||||  || |||||| |||||||||| ||||||||||||||    
T  33212204 agtgatatatgtacaactctttggtacaacttctatgacaactttaattgtctctcatttgattggtcaaaaataatagaga 33212123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 97
Target Start/End: Original strand, 2756845 - 2756907
Alignment:
Q  35 catgacaactttggttttctctcttttgattggttaaaaataatagagaaagagagagagaga 97  Q
    ||||||||||||| |||||||| ||||||||||| ||||  |||||||| |||||||||||||    
T  2756845 catgacaactttgtttttctctattttgattggtcaaaatcaatagagagagagagagagaga 2756907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 42276247 - 42276189
Alignment:
Q  25 gtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    |||||||||| ||| |||||||||||||||||| |||||| ||| ||||||||||||||    
T  42276247 gtacaatttttatggcaactttggttttctctcatttgataggtcaaaaataatagaga 42276189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 83
Target Start/End: Original strand, 27330920 - 27331001
Alignment:
Q  2 agtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    ||||| ||||| ||||||||||||||||| |||||||| || |||  |||| | ||||| ||||||| ||||||||||||||    
T  27330920 agtgatatatgtacaactctttggtacaactttcatgataattttaattttttatctttagattggtcaaaaataatagaga 27331001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 6822464 - 6822509
Alignment:
Q  38 gacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    |||||||||||||||||||  |||||||||| ||||||||||||||    
T  6822464 gacaactttggttttctcttctttgattggtcaaaaataatagaga 6822509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 99
Target Start/End: Original strand, 37149393 - 37149465
Alignment:
Q  27 acaattttcatgacaactttggttttctctcttttgattggttaaaaataatagagaaagagagagagagaaa 99  Q
    |||| ||| |||||||| ||| |||||| |||| | |||||| ||||| |||||||| |||||||||||||||    
T  37149393 acaacttttatgacaaccttgtttttctttcttcttattggtaaaaaacaatagagagagagagagagagaaa 37149465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 93
Target Start/End: Complemental strand, 23330039 - 23329996
Alignment:
Q  50 tttctctcttttgattggttaaaaataatagagaaagagagaga 93  Q
    |||||||||||| |||||| |||||||||||||| |||||||||    
T  23330039 tttctctctttttattggtaaaaaataatagagagagagagaga 23329996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 87
Target Start/End: Original strand, 34304620 - 34304658
Alignment:
Q  49 ttttctctcttttgattggttaaaaataatagagaaaga 87  Q
    ||||||||||||| |||||| ||||||||||||||||||    
T  34304620 ttttctctcttttcattggtcaaaaataatagagaaaga 34304658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 204
Target Start/End: Complemental strand, 42276121 - 42276091
Alignment:
Q  174 ttagaaaatagttgtacaaatatcatttctc 204  Q
    |||||||||||||||||||||||||||||||    
T  42276121 ttagaaaatagttgtacaaatatcatttctc 42276091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 28081721 - 28081762
Alignment:
Q  44 tttggttttctctcttttgattggttaaaaataatagagaaa 85  Q
    ||||||||||||| ||||||| ||| ||||||||||||||||    
T  28081721 tttggttttctcttttttgataggtaaaaaataatagagaaa 28081762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 30769576 - 30769629
Alignment:
Q  26 tacaattttcatgacaactttggttttctctcttttgattggttaaaaataata 79  Q
    ||||| |||||||||||||||| ||||||||| | |||||||| ||||| ||||    
T  30769576 tacaactttcatgacaactttgtttttctctcctatgattggtcaaaaacaata 30769629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 35212887 - 35212931
Alignment:
Q  39 acaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    ||||||||| | ||||||||| | |||||||||||||||||||||    
T  35212887 acaactttgttgttctctcttctcattggttaaaaataatagaga 35212931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 47905056 - 47905096
Alignment:
Q  49 ttttctctcttttgattggttaaaaataatagagaaagaga 89  Q
    ||||||||||||| |||||| ||||||||| ||||||||||    
T  47905056 ttttctctcttttcattggtaaaaaataatggagaaagaga 47905096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 2 - 83
Target Start/End: Original strand, 26391176 - 26391257
Alignment:
Q  2 agtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    ||||| ||||| |||||||||||||| || ||||||||||||||| ||||||| ||||||||||||| ||||||||||||||    
T  26391176 agtgatatatgaacaactctttggtataactttcatgacaactttagttttctatcttttgattggtcaaaaataatagaga 26391257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 27102266 - 27102200
Alignment:
Q  14 acaactctttggtacaattttcatgacaactttggttttctctc-ttttgattggttaaaaataata 79  Q
    ||||||||||||||||| |||||||||||||||| ||||||||| |||| |||||| ||||||||||    
T  27102266 acaactctttggtacaactttcatgacaactttgattttctctctttttaattggtcaaaaataata 27102200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 27144088 - 27144022
Alignment:
Q  14 acaactctttggtacaattttcatgacaactttggttttctctc-ttttgattggttaaaaataata 79  Q
    ||||||||||||||||| |||||||||||||||| ||||||||| |||| |||||| ||||||||||    
T  27144088 acaactctttggtacaactttcatgacaactttgattttctctctttttaattggtcaaaaataata 27144022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 2881476 - 2881412
Alignment:
Q  37 tgacaactttggttttctctcttttgattggttaaaaataatagagaaagagagagagagaaaga 101  Q
    ||||||||||| || |||||||| | |||||| |||||||||||||| |||||||||||||||||    
T  2881476 tgacaactttgtttctctctcttcttattggtcaaaaataatagagagagagagagagagaaaga 2881412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 87
Target Start/End: Complemental strand, 15098915 - 15098831
Alignment:
Q  3 gtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagagaaaga 87  Q
    |||| ||||| |||| | |||||||||| ||  |||||||||||| ||||||||| |||||||| | ||||||||||||||||||    
T  15098915 gtgatatatgtacaattttttggtacaacttctatgacaactttgattttctctcatttgattgataaaaaataatagagaaaga 15098831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 91
Target Start/End: Complemental strand, 27335017 - 27334953
Alignment:
Q  27 acaattttcatgacaactttggttttctctcttttgattggttaaaaataatagagaaagagaga 91  Q
    |||| ||| |||||||| ||| ||||||||||||| |||||| |||||||||||||| |||||||    
T  27335017 acaactttaatgacaaccttgtttttctctctttttattggtcaaaaataatagagagagagaga 27334953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 91
Target Start/End: Complemental strand, 27395757 - 27395693
Alignment:
Q  27 acaattttcatgacaactttggttttctctcttttgattggttaaaaataatagagaaagagaga 91  Q
    |||| ||| |||||||| ||| ||||||||||||| |||||| |||||||||||||| |||||||    
T  27395757 acaactttaatgacaaccttgtttttctctctttttattggtcaaaaataatagagagagagaga 27395693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 83
Target Start/End: Complemental strand, 13658446 - 13658401
Alignment:
Q  38 gacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    |||||||||||||||||||  |||||||||| ||||||||||||||    
T  13658446 gacaactttggttttctcttctttgattggtaaaaaataatagaga 13658401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 8778779 - 8778839
Alignment:
Q  16 aactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaata 76  Q
    |||| |||||||||| ||| |||||||||| | |||||||||||||||||| | |||||||    
T  8778779 aactatttggtacaacttttatgacaacttagattttctctcttttgattgatcaaaaata 8778839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 87
Target Start/End: Complemental strand, 32784891 - 32784831
Alignment:
Q  27 acaattttcatgacaactttggttttctctcttttgattggttaaaaataatagagaaaga 87  Q
    ||||||||  |||||| |||| ||||||||||||||||| || ||||||||| ||||||||    
T  32784891 acaattttggtgacaattttgtttttctctcttttgattagtcaaaaataatggagaaaga 32784831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 28883663 - 28883720
Alignment:
Q  26 tacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    ||||| |||||||||||||||| ||||||||  | |||||||| ||||| ||||||||    
T  28883663 tacaactttcatgacaactttgtttttctcttctatgattggtcaaaaacaatagaga 28883720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 97
Target Start/End: Complemental strand, 2862215 - 2862155
Alignment:
Q  37 tgacaactttggttttctctcttttgattggttaaaaataatagagaaagagagagagaga 97  Q
    |||||| |||| || ||||| || | |||||| |||||||||||||| |||||||||||||    
T  2862215 tgacaattttgtttctctcttttcttattggtcaaaaataatagagagagagagagagaga 2862155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 97
Target Start/End: Complemental strand, 3800737 - 3800677
Alignment:
Q  37 tgacaactttggttttctctcttttgattggttaaaaataatagagaaagagagagagaga 97  Q
    ||||||||||  ||||||||||| | ||||||  |||| |||||||| |||||||||||||    
T  3800737 tgacaactttcattttctctcttctcattggtccaaaacaatagagagagagagagagaga 3800677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 17835765 - 17835709
Alignment:
Q  27 acaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    |||| ||| |||||||||||| ||||||||||| | |||||||||||| ||| ||||    
T  17835765 acaactttaatgacaactttgtttttctctcttcttattggttaaaaacaatggaga 17835709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 10302248 - 10302317
Alignment:
Q  14 acaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    ||||||||||||||||| |||||||| ||||||| |||||||||||||||||||| ||||||||||||||    
T  10302248 acaactctttggtacaactttcatgataactttgattttctctcttttgattggtaaaaaataatagaga 10302317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 2 - 83
Target Start/End: Original strand, 11570256 - 11570337
Alignment:
Q  2 agtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    ||||| ||||| |||||||||| |||||| ||||||||||||||| || |||||||||||||||||| ||||||||||||||    
T  11570256 agtgatatatgtacaactctttcgtacaactttcatgacaacttttgtcttctctcttttgattggtcaaaaataatagaga 11570337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 32811769 - 32811838
Alignment:
Q  14 acaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    |||||||||| |||||| ||| |||||||||||||||||||||| |||||||||| ||||||||||||||    
T  32811769 acaactctttagtacaactttaatgacaactttggttttctctcatttgattggtcaaaaataatagaga 32811838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 21728150 - 21728208
Alignment:
Q  25 gtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    |||||| |||||||||||||||| |||| ||||||||||||||| ||||||||||||||    
T  21728150 gtacaactttcatgacaactttgattttatctcttttgattggtcaaaaataatagaga 21728208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 8670238 - 8670169
Alignment:
Q  14 acaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    |||||||||| |||| || || |||| ||||||| |||||| ||||||||||||| ||||||||||||||    
T  8670238 acaactcttttgtacgatctttatgataactttgtttttctatcttttgattggtcaaaaataatagaga 8670169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 24136825 - 24136894
Alignment:
Q  14 acaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    |||||| ||| |||||||||| ||||||| |||| ||||||||  |||||||||| ||||||||||||||    
T  24136825 acaactttttagtacaatttttatgacaaatttgtttttctcttatttgattggtaaaaaataatagaga 24136894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 44671941 - 44672010
Alignment:
Q  14 acaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    ||||||||| ||||||| ||| |||| |||||| |||||||||  |||||||||| ||||||||||||||    
T  44671941 acaactcttcggtacaacttttatgataactttagttttctcttctttgattggtcaaaaataatagaga 44672010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 12708262 - 12708193
Alignment:
Q  14 acaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    |||||||||| ||||||  || ||||||| |||| |||| | ||||||||||||| ||||||||||||||    
T  12708262 acaactcttttgtacaacctttatgacaattttgtttttatatcttttgattggtcaaaaataatagaga 12708193  T

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Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 12717807 - 12717738
Alignment:
Q  14 acaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    |||||||||| ||||||  || ||||||| |||| |||| | ||||||||||||| ||||||||||||||    
T  12717807 acaactcttttgtacaacctttatgacaattttgtttttatatcttttgattggtcaaaaataatagaga 12717738  T

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Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 42616023 - 42615954
Alignment:
Q  14 acaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    |||||||||| ||  ||| || |||||||||||| |||||| | ||||||||||| ||||||||||||||    
T  42616023 acaactcttttgtttaatatttatgacaactttgtttttctattttttgattggtcaaaaataatagaga 42615954  T

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Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 51849048 - 51848979
Alignment:
Q  14 acaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    |||||||||||||||||  |  |||||||||||| ||||||||  |||||||||| |||||||| |||||    
T  51849048 acaactctttggtacaacctctatgacaactttgattttctcttatttgattggtcaaaaataacagaga 51848979  T

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Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 85
Target Start/End: Complemental strand, 7503596 - 7503560
Alignment:
Q  49 ttttctctcttttgattggttaaaaataatagagaaa 85  Q
    ||||||||||||| |||||||||||||||||||||||    
T  7503596 ttttctctcttttcattggttaaaaataatagagaaa 7503560  T

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Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 35043638 - 35043694
Alignment:
Q  27 acaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    ||||||||||||||||| |   ||||||||||||| |||||||||||||||| ||||    
T  35043638 acaattttcatgacaacctcatttttctctctttttattggttaaaaataatggaga 35043694  T

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Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 38 - 85
Target Start/End: Original strand, 18540984 - 18541031
Alignment:
Q  38 gacaactttggttttctctcttttgattggttaaaaataatagagaaa 85  Q
    |||||||||| ||||||||  |||||||||| ||||||||||||||||    
T  18540984 gacaactttgattttctcttctttgattggtcaaaaataatagagaaa 18541031  T

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Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 25302573 - 25302619
Alignment:
Q  37 tgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    ||||||||||  ||||||||||||| |||||||||||| ||||||||    
T  25302573 tgacaactttttttttctctcttttcattggttaaaaacaatagaga 25302619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 40053065 - 40053003
Alignment:
Q  21 tttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    ||||||||||| ||   |||||||||| | ||||||||||| |||||| ||||||||||||||    
T  40053065 tttggtacaatctttgagacaactttgttgttctctcttttcattggtcaaaaataatagaga 40053003  T

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Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 204
Target Start/End: Complemental strand, 45042291 - 45042261
Alignment:
Q  174 ttagaaaatagttgtacaaatatcatttctc 204  Q
    |||||||||||||||||||||||||||||||    
T  45042291 ttagaaaatagttgtacaaatatcatttctc 45042261  T

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Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 950350 - 950419
Alignment:
Q  14 acaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    |||||| ||| | |||| ||| ||| ||| |||| |||||| ||||||||||||| ||||||||||||||    
T  950350 acaacttttttgaacaacttttatgccaattttgtttttctttcttttgattggtcaaaaataatagaga 950419  T

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Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 74
Target Start/End: Complemental strand, 5383902 - 5383865
Alignment:
Q  37 tgacaactttggttttctctcttttgattggttaaaaa 74  Q
    ||||||||||| ||||||||||||||||||| ||||||    
T  5383902 tgacaactttgtttttctctcttttgattggctaaaaa 5383865  T

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Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 8905882 - 8905821
Alignment:
Q  26 tacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagagaaaga 87  Q
    ||||| |||||| | ||||||| ||||||||  | |||||||| ||||||||||||||||||    
T  8905882 tacaactttcataataactttgtttttctcttctatgattggtcaaaaataatagagaaaga 8905821  T

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Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 203
Target Start/End: Original strand, 15182624 - 15182653
Alignment:
Q  174 ttagaaaatagttgtacaaatatcatttct 203  Q
    ||||||||||||||||||||||||||||||    
T  15182624 ttagaaaatagttgtacaaatatcatttct 15182653  T

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Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 210
Target Start/End: Original strand, 26585218 - 26585250
Alignment:
Q  178 aaaatagttgtacaaatatcatttctcgtaata 210  Q
    ||||||||||||||||||||||||||| |||||    
T  26585218 aaaatagttgtacaaatatcatttctcttaata 26585250  T

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Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 50777341 - 50777397
Alignment:
Q  27 acaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    ||||||||  ||||||| ||| ||||||||||| | |||||||||||| ||||||||    
T  50777341 acaattttggtgacaaccttgtttttctctcttcttattggttaaaaacaatagaga 50777397  T

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Target: scaffold0024 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 83
Target Start/End: Complemental strand, 92126 - 92045
Alignment:
Q  2 agtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    ||||| ||||| ||||||||||| ||||||||| ||||||| ||| ||||||||||||||||||||| ||||||| ||||||    
T  92126 agtgatatatgtacaactctttgatacaatttttatgacaatttttgttttctctcttttgattggtcaaaaatattagaga 92045  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 4723744 - 4723657
Alignment:
Q  2 agtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagagaaagaga 89  Q
    ||||| ||||| ||||||||||||||||| ||| || |||||||| ||||||||||||||||||||| ||||||| | |||| |||||    
T  4723744 agtgatatatgtacaactctttggtacaacttttataacaactttagttttctctcttttgattggtcaaaaatattggagagagaga 4723657  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 43057562 - 43057637
Alignment:
Q  8 atatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    ||||| ||| ||||||| || || ||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  43057562 atatgtacacctctttgatataactttcatgacaactttagttttctctcttttgattggtcaaaaataatagaga 43057637  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 97
Target Start/End: Complemental strand, 43356471 - 43356401
Alignment:
Q  27 acaattttcatgacaactttggttttctctcttttgattggttaaaaataatagagaaagagagagagaga 97  Q
    |||| |||||||||||||||| |||| ||| ||||||||||| |||| ||||||||| |||||||||||||    
T  43356471 acaactttcatgacaactttgtttttttctattttgattggtcaaaattaatagagagagagagagagaga 43356401  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 41868274 - 41868343
Alignment:
Q  14 acaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    ||||||||||| ||||| ||| | ||||||||||||||||||   |||||||||| ||||||||||||||    
T  41868274 acaactctttgatacaacttttacgacaactttggttttctcatatttgattggtcaaaaataatagaga 41868343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 44059567 - 44059498
Alignment:
Q  14 acaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    |||||| |||||||||| ||   |||||||||||||||||||||  ||||||||| ||||||||||||||    
T  44059567 acaactttttggtacaacttctgtgacaactttggttttctctcaattgattggtcaaaaataatagaga 44059498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 17917548 - 17917486
Alignment:
Q  21 tttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    |||| ||||||||| || |||||||||||||||| | ||||||||||| ||||||| ||||||    
T  17917548 tttgatacaatttttataacaactttggttttcttttttttgattggtcaaaaatattagaga 17917486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 13466001 - 13466049
Alignment:
Q  35 catgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    ||||||||||||| |||||||| ||||||||||| |||| |||||||||    
T  13466001 catgacaactttgtttttctctattttgattggtcaaaattaatagaga 13466049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 30413650 - 30413706
Alignment:
Q  27 acaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    ||||||||  ||||||||||| |||||||||||||||||||| ||||| ||| ||||    
T  30413650 acaattttggtgacaactttgcttttctctcttttgattggtcaaaaacaatggaga 30413706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 39744512 - 39744568
Alignment:
Q  27 acaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    |||| |||||||||||||||| |||||||| ||||||||||| ||||  ||||||||    
T  39744512 acaactttcatgacaactttgtttttctctattttgattggtcaaaatcaatagaga 39744568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 38 - 97
Target Start/End: Complemental strand, 1151671 - 1151612
Alignment:
Q  38 gacaactttggttttctctcttttgattggttaaaaataatagagaaagagagagagaga 97  Q
    |||||||||| | |||||| |||| |||||| ||||| |||||||| |||||||||||||    
T  1151671 gacaactttgttgttctcttttttcattggtcaaaaacaatagagagagagagagagaga 1151612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 83
Target Start/End: Original strand, 6851586 - 6851633
Alignment:
Q  36 atgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    |||||||||||| |||||||||||||||||||| ||||| ||| ||||    
T  6851586 atgacaactttgtttttctctcttttgattggtcaaaaacaattgaga 6851633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 38 - 97
Target Start/End: Complemental strand, 35518417 - 35518358
Alignment:
Q  38 gacaactttggttttctctcttttgattggttaaaaataatagagaaagagagagagaga 97  Q
    |||||||||| | ||||||||| | |||||| ||||| |||||||| |||||||||||||    
T  35518417 gacaactttgttgttctctcttcttattggtcaaaaacaatagagagagagagagagaga 35518358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 204
Target Start/End: Complemental strand, 23045123 - 23045093
Alignment:
Q  174 ttagaaaatagttgtacaaatatcatttctc 204  Q
    |||||||||||||||||||||||||||||||    
T  23045123 ttagaaaatagttgtacaaatatcatttctc 23045093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 37827697 - 37827759
Alignment:
Q  21 tttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    ||||||||||| || | |||||||||| | ||||||||||| |||||| |||||||| |||||    
T  37827697 tttggtacaatctttaagacaactttgttgttctctcttttcattggtcaaaaataaaagaga 37827759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 9377687 - 9377748
Alignment:
Q  38 gacaactttggttttctctcttttgattggttaaaaataatagagaaagagagagagagaaa 99  Q
    |||||||||| | ||||||||| | |||||| ||||| |||| ||| |||||||||||||||    
T  9377687 gacaactttgttgttctctcttcttattggtcaaaaagaatatagagagagagagagagaaa 9377748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 31635739 - 31635784
Alignment:
Q  38 gacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    |||||||||| ||||||||  |||||||||| ||||||||||||||    
T  31635739 gacaactttgattttctcttctttgattggtcaaaaataatagaga 31635784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 206
Target Start/End: Complemental strand, 7428459 - 7428431
Alignment:
Q  178 aaaatagttgtacaaatatcatttctcgt 206  Q
    |||||||||||||||||||||||||||||    
T  7428459 aaaatagttgtacaaatatcatttctcgt 7428431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 85
Target Start/End: Complemental strand, 32755809 - 32755773
Alignment:
Q  49 ttttctctcttttgattggttaaaaataatagagaaa 85  Q
    |||||||||||||||||||| ||||| ||||||||||    
T  32755809 ttttctctcttttgattggtcaaaaacaatagagaaa 32755773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 404914 - 404845
Alignment:
Q  14 acaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    ||||||||||||||||| ||| |||||||||||| ||||||||  || ||||||| | ||||| ||||||    
T  404914 acaactctttggtacaacttttatgacaactttgtttttctcttcttcgattggtcataaatactagaga 404845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 18169 - 18101
Alignment:
Q  14 acaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    |||||| |||| ||||| ||| |||||||||||  ||||||||||||| |||||||||||| ||| ||||    
T  18169 acaactatttgatacaacttttatgacaactttt-ttttctctcttttcattggttaaaaacaatggaga 18101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 31518 - 31574
Alignment:
Q  27 acaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 83  Q
    ||||||||  ||||||||||  ||||||||||||| |||||||||||| ||| ||||    
T  31518 acaatttttgtgacaactttttttttctctcttttcattggttaaaaacaatggaga 31574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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