View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0846_low_174 (Length: 264)
Name: NF0846_low_174
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_low_174 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 30 - 264
Target Start/End: Complemental strand, 28603020 - 28602786
Alignment:
| Q |
30 |
gcttcttggctggacacaaatataatttttggtgtgtgcacctatagtaacttctgataaagaaaataaatatttcacattagccaacaaattaggaagg |
129 |
Q |
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| T |
28603020 |
gcttcttggctggacacaaatataatttttggtgtgtgcacctatagtaacttctgataaagaatataaatatttcacattagccaacaaattaggaagg |
28602921 |
T |
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| Q |
130 |
agataataaaatgaataatcattaataactagccaaattatataataaaatcagtttgatattaaataatttataacctaatctttagatattttaaaat |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28602920 |
agataataaaatgaataatcattaataactagccaaattatataataaaatcagtttgatattaaataatttataacctaatctttagatattttaaaat |
28602821 |
T |
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| Q |
230 |
aaacataatctcttaagtgtttgcttactataatg |
264 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
28602820 |
aaacataatctcttaagtgtttgcttactataatg |
28602786 |
T |
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