View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0846_low_175 (Length: 264)
Name: NF0846_low_175
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_low_175 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 154; Significance: 9e-82; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 26 - 235
Target Start/End: Original strand, 10343640 - 10343853
Alignment:
| Q |
26 |
atcatgccaatgataatccttcatattacaactagtactagtagtagtggtggtgttaattccaccatctaaagacaaaactgaattacattactattgt |
125 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10343640 |
atcatgccaatgataatccttcatagtacaactagtactagtagtagtggtggtgttaattccaccatctaaagacaaaactgaattacattactattgt |
10343739 |
T |
|
| Q |
126 |
tttatgcaccagcctcagtttgtcctgcaacaggtgcatgaaacaattatatatatagggact-aaatatagctcca----tactctcgatgtatataca |
220 |
Q |
| |
|
|| |||||||| | ||||||| ||| ||||||||||||||||||| ||||||||||| ||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
10343740 |
ttcatgcaccaacttcagtttatcc-gcaacaggtgcatgaaacatttatatatatatggactaaaatatagctccatatgtactctcgatgtatataca |
10343838 |
T |
|
| Q |
221 |
ggaagacattgatca |
235 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
10343839 |
ggaagacattgatca |
10343853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 42 - 127
Target Start/End: Original strand, 10182223 - 10182308
Alignment:
| Q |
42 |
tccttcatattacaactagtactagtagtagtggtggtgttaattccaccatctaaagacaaaactgaattacattactattgttt |
127 |
Q |
| |
|
||||||||| | | |||| || || ||||||||||||||||||||| |||||||||| |||||| |||| ||||||||||||||| |
|
|
| T |
10182223 |
tccttcatagtgctactactagtattagtagtggtggtgttaattctaccatctaaatacaaaatggaatgacattactattgttt |
10182308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 10343002 - 10342954
Alignment:
| Q |
76 |
tggtgttaattccaccatctaaagacaaaactgaattacattactattg |
124 |
Q |
| |
|
||||||| ||||||||||||||||| |||| |||| |||||||||||| |
|
|
| T |
10343002 |
tggtgtttattccaccatctaaagaaaaaatagaatgacattactattg |
10342954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 926 times since January 2019
Visitors: 6039