View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0846_low_177 (Length: 261)
Name: NF0846_low_177
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_low_177 |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 40 - 243
Target Start/End: Original strand, 47172127 - 47172330
Alignment:
| Q |
40 |
aatacaacataagagggggtttctgaaactcatacaaactttcctcattataatatgttgattcaatttattggtccgcagtgtgtggccactagaccac |
139 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||| |
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| T |
47172127 |
aatacaacataagagggggtttctgaaactcatacaaactttcctcattataatatgttgattcaatttattggtctgcggtatgtggccactagaccac |
47172226 |
T |
|
| Q |
140 |
tcttctataaaaagaaatcatggttttgaagtgaggtgaatcaactcaacttcattcatgaattatatataatagtactatgagatatgcaagtgattca |
239 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47172227 |
tcttctataagaagaaatcatggttttgaagtgaggtgaatcaactcaacttcattcatgaattatatataatagtactatgagatatgcaagtgattct |
47172326 |
T |
|
| Q |
240 |
tctc |
243 |
Q |
| |
|
|||| |
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| T |
47172327 |
tctc |
47172330 |
T |
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