View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0846_low_178 (Length: 260)
Name: NF0846_low_178
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_low_178 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 30668330 - 30668100
Alignment:
| Q |
1 |
caaggtcattgcttaagagtgaatgagaaatgtagcaactctatgattgccacgtggcagcttggtaatcttcattgtgtggacgttatggtttcaatgg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30668330 |
caaggtcattgcttaagagtgaatgagaaatgtagcaactctatgattgccacgtggcagcttggtaatcttcattgtgtggacgttatggtttcaatga |
30668231 |
T |
|
| Q |
101 |
ccaatcctattgttacaccctatcaattaatcagctaatataaatccctcaatttgatcacaaatttgcatagaataattttcttcaatttcaactacct |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |
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| T |
30668230 |
ccaatcctattgttacaccctatcaattaatcagctaatataaatccctcaatttgatcacaaatttgcatagaataatttgcttcaatttcaactatct |
30668131 |
T |
|
| Q |
201 |
ttctcttttgtgtaataccaatcagtgcagt |
231 |
Q |
| |
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|||||||||||| |||||||||||||||||| |
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|
| T |
30668130 |
ttctcttttgtgcaataccaatcagtgcagt |
30668100 |
T |
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