View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0846_low_185 (Length: 258)
Name: NF0846_low_185
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF0846_low_185 |
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[»] scaffold0071 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 16)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 10 - 229
Target Start/End: Original strand, 31596480 - 31596699
Alignment:
Q |
10 |
ctttcctttccattctatgagtttttcgcgcgccctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgtt |
109 |
Q |
|
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
T |
31596480 |
ctttcctttccattctatgagtttttcgcgcgtcctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgtt |
31596579 |
T |
 |
Q |
110 |
gaaacatttcagattttaaaattcgaatagggcgcacaagaaactcataaagttcagattttgatccctaccgccaataaattttacacacgagtaaatc |
209 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
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|
T |
31596580 |
gaaacatttcagattttaaaattcgaatagggcgcacaagaaactcataaagttcagagtttgatccctaccgccaataaattctacacacgagtaaatc |
31596679 |
T |
 |
Q |
210 |
agcattttagtccttgaaat |
229 |
Q |
|
|
|||||||||||||||||||| |
|
|
T |
31596680 |
agcattttagtccttgaaat |
31596699 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 24 - 143
Target Start/End: Original strand, 29389126 - 29389245
Alignment:
Q |
24 |
ctatgagtttttcgcgcgccctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagat |
123 |
Q |
|
|
|||||||||| |||| || ||||||||||| |||| || ||| |||| ||||||||||||||||||| ||| |||||||||||||||||||||| ||| |
|
|
T |
29389126 |
ctatgagtttctcgcacgtcctatacagttcggattataaaatccgaacagcataaacacccaataaaaaccttcaaaaacacgttgaaacatttcggat |
29389225 |
T |
 |
Q |
124 |
tttaaaattcgaatagggcg |
143 |
Q |
|
|
|||||||| |||||||||| |
|
|
T |
29389226 |
tttaaaatctgaatagggcg |
29389245 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 24 - 157
Target Start/End: Original strand, 30525786 - 30525919
Alignment:
Q |
24 |
ctatgagtttttcgcgcgccctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagat |
123 |
Q |
|
|
|||||||||| |||| |||||||| || ||| |||| |||||| |||||||||||||| | |||||| |||||||||||||||||||||||||| ||| |
|
|
T |
30525786 |
ctatgagtttctcgcacgccctatgcaatttggattatagaatccgaacggcataaacatctcataaaaacctccaaaaacacgttgaaacatttcggat |
30525885 |
T |
 |
Q |
124 |
tttaaaattcgaatagggcgcacaagaaactcat |
157 |
Q |
|
|
| || |||||||||| ||| | ||| |||||||| |
|
|
T |
30525886 |
tctataattcgaatatggcacgcaaaaaactcat |
30525919 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 35 - 158
Target Start/End: Original strand, 33240831 - 33240952
Alignment:
Q |
35 |
tcgcgcgccctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagattttaaaattcg |
134 |
Q |
|
|
|||| ||||||||||||||| |||| |||||| |||| | ||||| |||| |||||| ||| ||||||| ||||||| ||||| ||||||| ||| || |
|
|
T |
33240831 |
tcgcacgccctatacagtttggattttagaatccgaactgtataaataccccataaaaaccttcaaaaac--gttgaaatatttcggattttagaatccg |
33240928 |
T |
 |
Q |
135 |
aatagggcgcacaagaaactcata |
158 |
Q |
|
|
|||||||||||| ||||||||||| |
|
|
T |
33240929 |
aatagggcgcacgagaaactcata |
33240952 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 33 - 131
Target Start/End: Complemental strand, 9929432 - 9929335
Alignment:
Q |
33 |
tttcgcgcgccctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagattttaaaat |
131 |
Q |
|
|
|||| |||||||||| ||||| |||| ||||||| ||||| |||||||||| |||||| ||||||||| |||||||||| ||||||||||||||||| |
|
|
T |
9929432 |
tttctcgcgccctatgcagttcggattatagaattcgaacgtcataaacacctcataaaaacctccaaaa-cacgttgaaagatttcagattttaaaat |
9929335 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 51 - 131
Target Start/End: Original strand, 29263803 - 29263883
Alignment:
Q |
51 |
gtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagattttaaaat |
131 |
Q |
|
|
||||||||| |||||| |||||| |||||||||||||||||| || ||||||||| ||||||||||| ||||||||||| |
|
|
T |
29263803 |
gtttagattatagaatctgaacgacataaacacccaataaaaatcttcaaaaacacattgaaacattttcgattttaaaat |
29263883 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 158
Target Start/End: Original strand, 18075520 - 18075621
Alignment:
Q |
56 |
gattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagattttaaaattcgaatagggcgcacaagaaactc |
155 |
Q |
|
|
|||| |||||| |||||| |||||||||| |||||| || |||||| ||||| ||| ||||||||||||| |||| |||||||||||| |||||||| |
|
|
T |
18075520 |
gattatagaatctgaacgaaataaacaccccataaaaaccaccaaaag-acgttaaaatatttcagattttataatttgaatagggcgcatgagaaactc |
18075618 |
T |
 |
Q |
156 |
ata |
158 |
Q |
|
|
||| |
|
|
T |
18075619 |
ata |
18075621 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 138
Target Start/End: Complemental strand, 31257649 - 31257572
Alignment:
Q |
61 |
tagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagattttaaaattcgaata |
138 |
Q |
|
|
|||||| ||||||| |||||||| | |||||| | |||||||| |||||||||||||| ||||| || |||||||||| |
|
|
T |
31257649 |
tagaatctgaacggtataaacactctataaaaacatccaaaaatacgttgaaacattttagattctataattcgaata |
31257572 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 158
Target Start/End: Original strand, 9540489 - 9540628
Alignment:
Q |
19 |
ccattctat-gagtttttcgcgcgccctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatt |
117 |
Q |
|
|
||||||||| |||||| | |||| ||||| ||||||| ||| || |||||||| | ||||||||||| |||||||||| |||||| ||| | | | ||| |
|
|
T |
9540489 |
ccattctattgagtttcttgcgcttcctatgcagtttaaattataaaatttgaatgacataaacaccctataaaatccttcaaaaa-acggtaagatatt |
9540587 |
T |
 |
Q |
118 |
tcagattttaaaattcgaatagggcgcacaagaaactcata |
158 |
Q |
|
|
|||||||||| ||| ||||||||||| ||||||||||| |
|
|
T |
9540588 |
tcagattttagaatctgaatagggcgcgtgagaaactcata |
9540628 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 158
Target Start/End: Complemental strand, 33450900 - 33450817
Alignment:
Q |
75 |
cataaacacccaataaaatcctccaaaaacacgttgaaacatttcagattttaaaattcgaatagggcgcacaagaaactcata |
158 |
Q |
|
|
|||||||||| ||||| |||||||||||||||||||| ||||| |||||| ||| |||||||| ||| |||||| |||||| |
|
|
T |
33450900 |
cataaacacctcctaaaagcctccaaaaacacgttgaaatatttcgaattttagaatccgaataggacgcgcaagaagctcata |
33450817 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 159
Target Start/End: Original strand, 30522112 - 30522177
Alignment:
Q |
94 |
cctccaaaaacacgttgaaacatttcagattttaaaattcgaatagggcgcacaagaaactcataa |
159 |
Q |
|
|
||||||||||||||| ||||||||| |||||| ||| |||||||||| |||||||| ||||||| |
|
|
T |
30522112 |
cctccaaaaacacgtaaaaacatttcggattttggaatccgaatagggcacacaagaacctcataa |
30522177 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 56 - 127
Target Start/End: Complemental strand, 989601 - 989531
Alignment:
Q |
56 |
gattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagatttta |
127 |
Q |
|
|
|||| |||||| |||| ||||||| ||| |||||||| |||||||||||||||||| ||||||||||||| |
|
|
T |
989601 |
gattttagaatccgaactgcataaaacccccataaaatc-tccaaaaacacgttgaaatatttcagatttta |
989531 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 124
Target Start/End: Original strand, 21871688 - 21871739
Alignment:
Q |
73 |
ggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagatt |
124 |
Q |
|
|
|||||||||||||| ||||| ||||||||||||| ||||||||||| |||| |
|
|
T |
21871688 |
ggcataaacacccagtaaaaacctccaaaaacactatgaaacatttcggatt |
21871739 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 161
Target Start/End: Original strand, 6355752 - 6355814
Alignment:
Q |
99 |
aaaaacacgttgaaacatttcagattttaaaattcgaatagggcgcacaagaaactcataaag |
161 |
Q |
|
|
||||| || |||||| |||| |||||||||||||| |||||| | ||| |||||||||||||| |
|
|
T |
6355752 |
aaaaatacattgaaatattttagattttaaaattcaaataggacacacgagaaactcataaag |
6355814 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 159
Target Start/End: Original strand, 9330243 - 9330315
Alignment:
Q |
87 |
ataaaatcctccaaaaacacgttgaaacatttcagattttaaaattcgaatagggcgcacaagaaactcataa |
159 |
Q |
|
|
|||||| ||| ||||||||| |||||| ||||| ||||| | |||||||||| |||| | |||||||||||| |
|
|
T |
9330243 |
ataaaaaccttcaaaaacacattgaaatatttcggatttcagcattcgaatagagcgcgcgagaaactcataa |
9330315 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 140
Target Start/End: Original strand, 13214180 - 13214244
Alignment:
Q |
76 |
ataaacacccaataaaatcctccaaaaacacgttgaaacatttcagattttaaaattcgaatagg |
140 |
Q |
|
|
|||||||||| | | || |||| ||||||||||||||| ||||| ||||||||||| ||||||| |
|
|
T |
13214180 |
ataaacaccctaaataaacctctaaaaacacgttgaaatatttcggattttaaaatctgaatagg |
13214244 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 25 - 159
Target Start/End: Original strand, 22713386 - 22713519
Alignment:
Q |
25 |
tatgagtttttcgcgcgccctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagatt |
124 |
Q |
|
|
||||||||| || ||| | ||||| |||||||||| || ||| ||| ||||||||||||| ||||| |||||||||||||||||||| |||||||||| |
|
|
T |
22713386 |
tatgagtttctcacgcactctatatagtttagattataaaatccgaatggcataaacaccctgtaaaaacctccaaaaacacgttgaaatatttcagatt |
22713485 |
T |
 |
Q |
125 |
ttaaaattcgaatagggcgcacaagaaactcataa |
159 |
Q |
|
|
||||||||| |||| ||||||| |||||||||||| |
|
|
T |
22713486 |
ttaaaattcaaata-ggcgcacgagaaactcataa |
22713519 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 158
Target Start/End: Original strand, 35424848 - 35424980
Alignment:
Q |
25 |
tatgagtttttcgcgcgccctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagatt |
124 |
Q |
|
|
||||| ||| ||| ||| ||||| ||||| |||| |||||| ||||||||||||||| | |||||| ||||||||| | ||| ||| |||||||||| |
|
|
T |
35424848 |
tatgaatttctcgtgcgtcctatgtagtttggattatagaatctgaacggcataaacatcgcataaaaacctccaaaat-atgttaaaatatttcagatt |
35424946 |
T |
 |
Q |
125 |
ttaaaattcgaatagggcgcacaagaaactcata |
158 |
Q |
|
|
||| ||||||| |||||||||| ||||||||||| |
|
|
T |
35424947 |
ttagaattcgattagggcgcacgagaaactcata |
35424980 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 131
Target Start/End: Complemental strand, 17116030 - 17115923
Alignment:
Q |
24 |
ctatgagtttttcgcgcgccctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagat |
123 |
Q |
|
|
|||||||||| |||| || |||| |||||| ||| ||||||| ||||| ||||||||||| |||||| | | |||||||||||||||| |||| |||| |
|
|
T |
17116030 |
ctatgagtttctcgcacgtcctacgcagtttgtattatagaattcgaacgacataaacaccccataaaaactttcaaaaacacgttgaaatattttagat |
17115931 |
T |
 |
Q |
124 |
tttaaaat |
131 |
Q |
|
|
|||||||| |
|
|
T |
17115930 |
tttaaaat |
17115923 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 90 - 143
Target Start/End: Complemental strand, 12427041 - 12426987
Alignment:
Q |
90 |
aaatcctccaaaaaca-cgttgaaacatttcagattttaaaattcgaatagggcg |
143 |
Q |
|
|
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
|
|
T |
12427041 |
aaatcctccaaaaacaacgttgaaacatttcagattttagaattcgaatagggcg |
12426987 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 158
Target Start/End: Original strand, 3255092 - 3255226
Alignment:
Q |
24 |
ctatgagtttttcgcgcgccctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagat |
123 |
Q |
|
|
|||||||||| ||| | || |||| ||||| |||| || ||| ||||||||||||||||| |||||| ||| |||||| | |||||| |||| |||| |
|
|
T |
3255092 |
ctatgagtttctcgtgtgctctatgcagttcggattatataatcagaacggcataaacaccccataaaaaccttcaaaaatatattgaaatattttagat |
3255191 |
T |
 |
Q |
124 |
tttaaaattcgaatagggcgcacaagaaactcata |
158 |
Q |
|
|
|||| ||| ||||||| |||| | ||||||||||| |
|
|
T |
3255192 |
tttagaatccgaatagagcgcgcgagaaactcata |
3255226 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 94 - 158
Target Start/End: Complemental strand, 40256885 - 40256821
Alignment:
Q |
94 |
cctccaaaaacacgttgaaacatttcagattttaaaattcgaatagggcgcacaagaaactcata |
158 |
Q |
|
|
||||||||||||||||| || ||||||||||||||||| |||||| ||||| | | ||||||||| |
|
|
T |
40256885 |
cctccaaaaacacgttgcaatatttcagattttaaaatccgaataaggcgcgcgaaaaactcata |
40256821 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 40172497 - 40172546
Alignment:
Q |
56 |
gattgtagaatttgaacggcataaacacccaataaaatcctccaaaaaca |
105 |
Q |
|
|
|||| |||||||||||| |||||||||||||||||| |||||||||||| |
|
|
T |
40172497 |
gattatagaatttgaacaacataaacacccaataaaaacctccaaaaaca |
40172546 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 44 - 131
Target Start/End: Complemental strand, 20953315 - 20953228
Alignment:
Q |
44 |
ctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagattttaaaat |
131 |
Q |
|
|
||||||| || ||||| ||||||| |||| |||||| | | ||||||| ||| ||||||| |||||||||||| |||||||||||| |
|
|
T |
20953315 |
ctatacaattaagattatagaattcgaacaacataaatatcttataaaattctcaaaaaacatgttgaaacattttagattttaaaat |
20953228 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 154
Target Start/End: Complemental strand, 44453743 - 44453615
Alignment:
Q |
25 |
tatgagtttttcgcgcgccctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagatt |
124 |
Q |
|
|
||||||||| || ||||| |||||||||| ||| |||||| |||| | ||||| || | |||||| | |||||||||||||||||| ||||| ||| |
|
|
T |
44453743 |
tatgagtttctcacgcgctctatacagttcgcattttagaatccgaactgtataaagactccataaaa-cttccaaaaacacgttgaaatatttcgaatt |
44453645 |
T |
 |
Q |
125 |
ttaaaattcgaatagggcgcacaagaaact |
154 |
Q |
|
|
||| ||| |||||||| || || ||||||| |
|
|
T |
44453644 |
ttagaatccgaataggacgtacgagaaact |
44453615 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 154
Target Start/End: Complemental strand, 31459480 - 31459424
Alignment:
Q |
98 |
caaaaacacgttgaaacatttcagattttaaaattcgaatagggcgcacaagaaact |
154 |
Q |
|
|
|||||| ||||||||| ||||| |||||||||||| ||||||| | ||| ||||||| |
|
|
T |
31459480 |
caaaaatacgttgaaatatttcggattttaaaatttgaataggacacacgagaaact |
31459424 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 84
Target Start/End: Original strand, 36415995 - 36416027
Alignment:
Q |
52 |
tttagattgtagaatttgaacggcataaacacc |
84 |
Q |
|
|
|||||||| |||||||||||||||||||||||| |
|
|
T |
36415995 |
tttagattatagaatttgaacggcataaacacc |
36416027 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 24 - 158
Target Start/End: Complemental strand, 37507683 - 37507550
Alignment:
Q |
24 |
ctatgagtttttcgcgcgccctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagat |
123 |
Q |
|
|
|||||||||| ||| || ||||| || ||| | || |||||| |||||| |||||| |||| |||||| ||||||||| |||||||||||||||| ||| |
|
|
T |
37507683 |
ctatgagtttctcgtgcttcctatgcaatttggtttatagaatctgaacgacataaataccccataaaaacctccaaaa-cacgttgaaacatttcggat |
37507585 |
T |
 |
Q |
124 |
tttaaaattcgaatagggcgcacaagaaactcata |
158 |
Q |
|
|
|||| |||||||||||||||| ||||||||||||| |
|
|
T |
37507584 |
tttagaattcgaatagggcgcgcaagaaactcata |
37507550 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 25 - 144
Target Start/End: Complemental strand, 40899771 - 40899652
Alignment:
Q |
25 |
tatgagtttttcgcgcgccctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagatt |
124 |
Q |
|
|
||||||||| ||||||| | || ||| || ||||| || |||| ||| ||||||||||||| |||||| ||| |||||||||||| ||| |||||||||| |
|
|
T |
40899771 |
tatgagtttctcgcgcgtcttagacaattcagattataaaattcgaaaggcataaacaccccataaaaaccttcaaaaacacgttaaaatatttcagatt |
40899672 |
T |
 |
Q |
125 |
ttaaaattcgaatagggcgc |
144 |
Q |
|
|
||||||| ||||||||||| |
|
|
T |
40899671 |
ttaaaatctgaatagggcgc |
40899652 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 61 - 138
Target Start/End: Complemental strand, 7632764 - 7632687
Alignment:
Q |
61 |
tagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagattttaaaattcgaata |
138 |
Q |
|
|
|||||| |||||| ||||||||||| |||||| ||| |||||| ||||||||| |||||| ||||||||||| ||||| |
|
|
T |
7632764 |
tagaatctgaacgacataaacacccgataaaaaccttcaaaaatacgttgaaatatttcaaattttaaaatttgaata |
7632687 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 158
Target Start/End: Original strand, 27157638 - 27157771
Alignment:
Q |
24 |
ctatgagtttttcgcgcgccctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagat |
123 |
Q |
|
|
|||| ||||| ||| ||||||||| || || |||| |||||| ||| |||||||| |||| |||||||| ||||||| |||||||||| | ||| ||| |
|
|
T |
27157638 |
ctatcagtttatcgtgcgccctatgcatttcggattatagaatccgaatggcataaataccccataaaatc-tccaaaaccacgttgaaataattcggat |
27157736 |
T |
 |
Q |
124 |
tttaaaattcgaatagggcgcacaagaaactcata |
158 |
Q |
|
|
|||| ||| ||||||| ||||| ||||||||||| |
|
|
T |
27157737 |
tttagaatccgaatagcacgcacgagaaactcata |
27157771 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 75 - 131
Target Start/End: Complemental strand, 39555953 - 39555898
Alignment:
Q |
75 |
cataaacacccaataaaatcctccaaaaacacgttgaaacatttcagattttaaaat |
131 |
Q |
|
|
||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||| |
|
|
T |
39555953 |
cataaacaccctataaaaatctc-aaaaacacgttgaaacatttcagattttaaaat |
39555898 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 159
Target Start/End: Complemental strand, 26462406 - 26462347
Alignment:
Q |
100 |
aaaacacgttgaaacatttcagattttaaaattcgaatagggcgcacaagaaactcataa |
159 |
Q |
|
|
|||||||||||||||||||||||||||| |||| ||||||| || || | |||||||||| |
|
|
T |
26462406 |
aaaacacgttgaaacatttcagattttataatttgaataggacgtacgaaaaactcataa |
26462347 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 76 - 158
Target Start/End: Complemental strand, 40506709 - 40506627
Alignment:
Q |
76 |
ataaacacccaataaaatcctccaaaaacacgttgaaacatttcagattttaaaattcgaatagggcgcacaagaaactcata |
158 |
Q |
|
|
|||||||| | |||||| ||||||||| |||||||||| ||||| ||||||| ||| | |||||||| || ||||||||||| |
|
|
T |
40506709 |
ataaacactccataaaaacctccaaaatcacgttgaaatatttcggattttacaatccaaatagggcatacgagaaactcata |
40506627 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 230
Target Start/End: Complemental strand, 11475592 - 11475561
Alignment:
Q |
199 |
acgagtaaatcagcattttagtccttgaaatt |
230 |
Q |
|
|
|||||||||||||||||||||||||||||||| |
|
|
T |
11475592 |
acgagtaaatcagcattttagtccttgaaatt |
11475561 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 140
Target Start/End: Original strand, 9045716 - 9045762
Alignment:
Q |
94 |
cctccaaaaacacgttgaaacatttcagattttaaaattcgaatagg |
140 |
Q |
|
|
|||||||||||||||||||| |||||||||||| |||| ||||||| |
|
|
T |
9045716 |
cctccaaaaacacgttgaaatatttcagatttttaaatctgaatagg |
9045762 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 138
Target Start/End: Original strand, 28503201 - 28503322
Alignment:
Q |
16 |
tttccattctatgagtttttcgcgcgccctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaaca |
115 |
Q |
|
|
||||||| ||||||||||||| |||| ||||| |||||| |||| || |||| |||||||||||| || | |||||| ||||| |||| ||||||||| | |
|
|
T |
28503201 |
tttccatcctatgagtttttcacgcgtcctatgcagtttggattataaaattcgaacggcataaatactccataaaaacctcc-aaaatacgttgaaata |
28503299 |
T |
 |
Q |
116 |
tttcagattttaaaattcgaata |
138 |
Q |
|
|
|||||||||||| |||||||||| |
|
|
T |
28503300 |
tttcagattttagaattcgaata |
28503322 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 24 - 129
Target Start/End: Complemental strand, 22017756 - 22017651
Alignment:
Q |
24 |
ctatgagtttttcgcgcgccctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagat |
123 |
Q |
|
|
|||||||||| | || || ||||| ||||| |||| |||||| ||| ||||||||||||| |||||| ||||||||||| |||||||||||||||||| |
|
|
T |
22017756 |
ctatgagtttcttgcacgtcctatgcagttcggattatagaatccgaatggcataaacaccccataaaaacctccaaaaacgcgttgaaacatttcagat |
22017657 |
T |
 |
Q |
124 |
tttaaa |
129 |
Q |
|
|
|||||| |
|
|
T |
22017656 |
tttaaa |
22017651 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 27 - 140
Target Start/End: Complemental strand, 40491819 - 40491706
Alignment:
Q |
27 |
tgagtttttcgcgcgccctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagatttt |
126 |
Q |
|
|
||||||| ||||| |||||| | ||||| |||| |||||| | ||||||||||||||| |||||| ||||||||||||||||||||||||| |||||| |
|
|
T |
40491819 |
tgagtttctcgcgtgccctacatagtttggattatagaatctaaacggcataaacacctcataaaaacctccaaaaacacgttgaaacattttggatttt |
40491720 |
T |
 |
Q |
127 |
aaaattcgaatagg |
140 |
Q |
|
|
| ||| | |||||| |
|
|
T |
40491719 |
agaatccaaatagg |
40491706 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 155
Target Start/End: Complemental strand, 8217200 - 8217121
Alignment:
Q |
75 |
cataaacacccaataaaatcctccaaaaacacgttgaaacatttcagattttaaaattcgaatagggcgcacaagaaactc |
155 |
Q |
|
|
||||||||||| |||||| ||| ||||||||||| ||||||||||||||||| |||| ||||||||||| | |||||||| |
|
|
T |
8217200 |
cataaacaccccataaaaatctc-aaaaacacgttaaaacatttcagattttagaatttgaatagggcgcgcgagaaactc |
8217121 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 158
Target Start/End: Original strand, 7765248 - 7765308
Alignment:
Q |
98 |
caaaaacacgttgaaacatttcagattttaaaattcgaatagggcgcacaagaaactcata |
158 |
Q |
|
|
|||||||||||||||| ||||| |||||||||||| ||||| | ||||||| ||||||||| |
|
|
T |
7765248 |
caaaaacacgttgaaatatttcggattttaaaatttgaataagacgcacaaaaaactcata |
7765308 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 118
Target Start/End: Original strand, 22023753 - 22023810
Alignment:
Q |
61 |
tagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacattt |
118 |
Q |
|
|
||||||| |||||||||||||||| |||||| ||||||||||| |||||||||||| |
|
|
T |
22023753 |
tagaattccaacggcataaacaccctataaaaagctccaaaaacatgttgaaacattt |
22023810 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 154
Target Start/End: Original strand, 13271486 - 13271542
Alignment:
Q |
98 |
caaaaacacgttgaaacatttcagattttaaaattcgaatagggcgcacaagaaact |
154 |
Q |
|
|
|||||||||||||||| ||||||||||||| ||||| |||||| ||| | ||||||| |
|
|
T |
13271486 |
caaaaacacgttgaaatatttcagattttagaattcaaataggacgcgcgagaaact |
13271542 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 158
Target Start/End: Complemental strand, 36183412 - 36183337
Alignment:
Q |
82 |
acccaataaaatcctccaaaaacacgttgaaacatttcagattttaaaattcgaatagggcgcacaagaaactcata |
158 |
Q |
|
|
|||| |||||| ||||||||| | ||||||||||||| ||||||| ||| |||||| ||||||| ||||||||||| |
|
|
T |
36183412 |
accccataaaaacctccaaaat-atgttgaaacatttcggattttagaatccgaatatggcgcacgagaaactcata |
36183337 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 124
Target Start/End: Complemental strand, 18401309 - 18401259
Alignment:
Q |
74 |
gcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagatt |
124 |
Q |
|
|
||||||||||| ||| | ||||||||||||||||||||||||||||||| |
|
|
T |
18401309 |
gcataaacacctcatacagacctccaaaaacacgttgaaacatttcagatt |
18401259 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 160
Target Start/End: Complemental strand, 41149638 - 41149517
Alignment:
Q |
38 |
cgcgccctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagattttaaaattcgaat |
137 |
Q |
|
|
|||||||||| || || |||| |||||||||||| ||||||| | || |||||| | | |||||||||| ||||| || | ||||||| ||||| ||| |
|
|
T |
41149638 |
cgcgccctatgcaattcggattttagaatttgaaccgcataaaaatcccataaaa-ctttcaaaaacacgatgaaatatgttggattttagaattcaaat |
41149540 |
T |
 |
Q |
138 |
agggcgcacaagaaactcataaa |
160 |
Q |
|
|
||||| ||| |||| |||||||| |
|
|
T |
41149539 |
agggcacacgagaagctcataaa |
41149517 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 127
Target Start/End: Complemental strand, 17223151 - 17223111
Alignment:
Q |
87 |
ataaaatcctccaaaaacacgttgaaacatttcagatttta |
127 |
Q |
|
|
|||||| ||| |||||||||||||||| ||||||||||||| |
|
|
T |
17223151 |
ataaaaacctgcaaaaacacgttgaaatatttcagatttta |
17223111 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 143
Target Start/End: Original strand, 32177306 - 32177350
Alignment:
Q |
99 |
aaaaacacgttgaaacatttcagattttaaaattcgaatagggcg |
143 |
Q |
|
|
||||| ||||| ||||||||||||||||| ||| ||||||||||| |
|
|
T |
32177306 |
aaaaatacgttaaaacatttcagattttagaatacgaatagggcg |
32177350 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 69 - 155
Target Start/End: Original strand, 38308085 - 38308171
Alignment:
Q |
69 |
gaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagattttaaaattcgaatagggcgcacaagaaactc |
155 |
Q |
|
|
||||||||||||||||| |||||| | | ||||||||||||||||||||||||||||||||| | ||||||||||| ||||| |||| |
|
|
T |
38308085 |
gaacggcataaacaccctataaaaactttcaaaaacacgttgaaacatttcagattttaaaactagaatagggcgcgcaagacactc |
38308171 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 70 - 158
Target Start/End: Complemental strand, 43050213 - 43050126
Alignment:
Q |
70 |
aacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagattttaaaattcgaatagggcgcacaagaaactcata |
158 |
Q |
|
|
|||| |||||| |||| ||||| ||||||||| |||||||||||||||||||||||||||| |||||| |||| ||||||||||||| |
|
|
T |
43050213 |
aacgacataaataccctgtaaaaacctccaaaa-cacgttgaaacatttcagattttaaaatccgaataaggcgtgcaagaaactcata |
43050126 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 131
Target Start/End: Complemental strand, 5868049 - 5867943
Alignment:
Q |
24 |
ctatgagtttttcgcgcgccctatacagtttagattgtagaatttgaacggcataaacaccca-ataaaatcctccaaaaacacgttgaaacatttcaga |
122 |
Q |
|
|
|||||||||| || ||||||||||||| || ||| |||||| |||| ||||||| ||||| |||||||| |||||||||||||||||| |||||||| |
|
|
T |
5868049 |
ctatgagtttctcacgcgccctatacaattcgaattttagaatccgaactgcataaa-acccacataaaatc-tccaaaaacacgttgaaatatttcaga |
5867952 |
T |
 |
Q |
123 |
ttttaaaat |
131 |
Q |
|
|
||||||||| |
|
|
T |
5867951 |
ttttaaaat |
5867943 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 155
Target Start/End: Complemental strand, 775137 - 775008
Alignment:
Q |
25 |
tatgagtttttcgcgcgccctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagatt |
124 |
Q |
|
|
||||||||| || |||| |||||| |||||||||| |||||| ||| || ||||| |||| |||||| ||||||||| | |||||||||||| || | |
|
|
T |
775137 |
tatgagtttctcacgcgtcctataaagtttagattatagaatccgaatggaataaataccccataaaaacctccaaaa-cgtgttgaaacattttggaat |
775039 |
T |
 |
Q |
125 |
ttaaaattcgaatagggcgcacaagaaactc |
155 |
Q |
|
|
||||||| |||||| |||||| |||||||| |
|
|
T |
775038 |
ttaaaatatgaatagagcgcacgagaaactc |
775008 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 141
Target Start/End: Complemental strand, 24511041 - 24510925
Alignment:
Q |
24 |
ctatgagtttttcgcgcgccctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagat |
123 |
Q |
|
|
|||||| ||| ||||| |||||| ||||| ||| ||||||| ||||||||||||| || |||||| ||||||||| ||||| ||| ||||||||| |
|
|
T |
24511041 |
ctatgaatttctcgcgttccctatgcagttcgaattatagaattcaaacggcataaacatcccataaaaacctccaaaat-acgtttaaatatttcagat |
24510943 |
T |
 |
Q |
124 |
tttaaaattcgaataggg |
141 |
Q |
|
|
|||||||| ||||||||| |
|
|
T |
24510942 |
tttaaaatccgaataggg |
24510925 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 158
Target Start/End: Original strand, 13019632 - 13019747
Alignment:
Q |
43 |
cctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagattttaaaattcgaatagggc |
142 |
Q |
|
|
||||| |||||| |||| |||||| ||||||||||||||| | |||||| || ||||| ||| ||||||| ||||||||||| |||| |||| ||| | |
|
|
T |
13019632 |
cctatgcagtttggattatagaatccgaacggcataaacactccataaaaatcttcaaaatcacattgaaacgtttcagattttcaaatccgaaaaggac |
13019731 |
T |
 |
Q |
143 |
gcacaagaaactcata |
158 |
Q |
|
|
| | ||||||||||| |
|
|
T |
13019732 |
acgcgagaaactcata |
13019747 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 89 - 140
Target Start/End: Original strand, 13378425 - 13378476
Alignment:
Q |
89 |
aaaatcctccaaaaacacgttgaaacatttcagattttaaaattcgaatagg |
140 |
Q |
|
|
|||| ||||||||||||| |||||| ||||||||||||| ||| |||||||| |
|
|
T |
13378425 |
aaaaacctccaaaaacacattgaaatatttcagattttataatccgaatagg |
13378476 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 159
Target Start/End: Original strand, 28816193 - 28816252
Alignment:
Q |
100 |
aaaacacgttgaaacatttcagattttaaaattcgaatagggcgcacaagaaactcataa |
159 |
Q |
|
|
|||||||||||||| |||| | |||||| |||| ||||||||||||| ||||||| |||| |
|
|
T |
28816193 |
aaaacacgttgaaatatttaaaattttataatttgaatagggcgcacgagaaacttataa |
28816252 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 156
Target Start/End: Complemental strand, 19572638 - 19572582
Alignment:
Q |
100 |
aaaacacgttgaaacatttcagattttaaaattcgaatagggcgcacaagaaactca |
156 |
Q |
|
|
|||||||||| ||||||||||||||||||||| | |||| ||| | | ||||||||| |
|
|
T |
19572638 |
aaaacacgttaaaacatttcagattttaaaatccaaatatggcacgccagaaactca |
19572582 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 13)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 26 - 158
Target Start/End: Complemental strand, 23405021 - 23404890
Alignment:
Q |
26 |
atgagtttttcgcgcgccctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagattt |
125 |
Q |
|
|
||||||||||||||||||||||| | || || | ||||||| ||||||||||| |||| ||||| || |||||||||| |||||||| |||| ||||| |
|
|
T |
23405021 |
atgagtttttcgcgcgccctatatatttcggaatatagaattcaaacggcataaaaaccccataaa-tcttccaaaaacatgttgaaacgtttcggattt |
23404923 |
T |
 |
Q |
126 |
taaaattcgaatagggcgcacaagaaactcata |
158 |
Q |
|
|
||||||||||||| | || | ||||||||||| |
|
|
T |
23404922 |
taaaattcgaatatgacgtgcgagaaactcata |
23404890 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 42 - 158
Target Start/End: Original strand, 37865442 - 37865558
Alignment:
Q |
42 |
ccctatacagtttagattgtagaatttgaacggcataaacaccca-ataaaatcctccaaaaacacgttgaaacatttcagattttaaaattcgaatagg |
140 |
Q |
|
|
|||||| ||||| |||| |||||| |||||| ||||||||||| |||||| |||||||||||||| ||| |||||||| |||||||||| |||||||| |
|
|
T |
37865442 |
ccctatgcagttcggattatagaatctgaacgacataaacacccccataaaa-cctccaaaaacacgctgagacatttcaaattttaaaatccgaatagg |
37865540 |
T |
 |
Q |
141 |
gcgcacaagaaactcata |
158 |
Q |
|
|
|| || ||||||||||| |
|
|
T |
37865541 |
gcacatgagaaactcata |
37865558 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 27 - 142
Target Start/End: Complemental strand, 563935 - 563821
Alignment:
Q |
27 |
tgagtttttcgcgcgccctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagatttt |
126 |
Q |
|
|
||||||| ||||||| ||||||||||| ||| |||||||| || | ||||||||||| |||||||||| |||||||||||| | | |||||| ||||| |
|
|
T |
563935 |
tgagtttctcgcgcgacctatacagttcgaattatagaatttaaatgacataaacaccctataaaatcct-caaaaacacgttaacatatttcaaatttt |
563837 |
T |
 |
Q |
127 |
aaaattcgaatagggc |
142 |
Q |
|
|
| ||||||| |||||| |
|
|
T |
563836 |
agaattcgactagggc |
563821 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 141
Target Start/End: Original strand, 18638981 - 18639107
Alignment:
Q |
16 |
tttccattctatgagtttttcgcgcgccctatacagtttagattgtagaatttgaacggcataaacacccaat-aaaatcctccaaaaacacgttgaaac |
114 |
Q |
|
|
|||||||||||||||||| ||| || |||||| ||||| ||||| || |||||||||||||||| ||||| || |||||| | ||||| | |||||| |
|
|
T |
18638981 |
tttccattctatgagtttctcgtgcaccctatgcagttcagattataaaatttgaacggcataagcaccccataaaaatctacaaaaaatatattgaaat |
18639080 |
T |
 |
Q |
115 |
atttcagattttaaaattcgaataggg |
141 |
Q |
|
|
||||| |||||||||| ||||||||| |
|
|
T |
18639081 |
atttcgaattttaaaatccgaataggg |
18639107 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 158
Target Start/End: Complemental strand, 46940080 - 46939960
Alignment:
Q |
38 |
cgcgccctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagattttaaaattcgaat |
137 |
Q |
|
|
|||||||||||||||| |||| |||||| |||| |||||||| | ||||| ||| |||||||| |||||||||||||||||||| ||||||||| |
|
|
T |
46940080 |
cgcgccctatacagttcggattatagaatccgaacaacataaacaatctataaagaccttcaaaaacatattgaaacatttcagattttagaattcgaat |
46939981 |
T |
 |
Q |
138 |
agggcgcacaagaaactcata |
158 |
Q |
|
|
||| ||||||||| ||||| |
|
|
T |
46939980 |
aggatccacaagaaattcata |
46939960 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 140
Target Start/End: Complemental strand, 48401012 - 48400944
Alignment:
Q |
71 |
acggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagattttaaaattcgaatagg |
140 |
Q |
|
|
||||||||||||||| |||||| ||||| |||||||||| ||||||||| ||||||| ||| |||||||| |
|
|
T |
48401012 |
acggcataaacaccctataaaaacctcc-aaaacacgttaaaacatttcggattttagaatccgaatagg |
48400944 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 100 - 158
Target Start/End: Original strand, 51474048 - 51474106
Alignment:
Q |
100 |
aaaacacgttgaaacatttcagattttaaaattcgaatagggcgcacaagaaactcata |
158 |
Q |
|
|
|||| ||||| ||||||||||||||||| |||| ||||| ||||||| ||||||||||| |
|
|
T |
51474048 |
aaaagacgttaaaacatttcagattttataatttgaatacggcgcacgagaaactcata |
51474106 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 158
Target Start/End: Original strand, 31578003 - 31578067
Alignment:
Q |
94 |
cctccaaaaacacgttgaaacatttcagattttaaaattcgaatagggcgcacaagaaactcata |
158 |
Q |
|
|
|||||||||||||||||||| ||||| ||||||| ||| | |||||||||| | |||| |||||| |
|
|
T |
31578003 |
cctccaaaaacacgttgaaatatttcggattttagaatccaaatagggcgcgcgagaagctcata |
31578067 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 113
Target Start/End: Original strand, 30527664 - 30527757
Alignment:
Q |
19 |
ccattctatgagtttttcgcgcgccctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaa |
113 |
Q |
|
|
|||| ||||| |||| || |||| ||||| ||| || |||| |||||| |||||||||||| | || |||||| |||||||||||||||||||| |
|
|
T |
30527664 |
ccatcctatgtgtttctcacgcgtcctatgcagattggattttagaatccgaacggcataaaaaacccataaaa-cctccaaaaacacgttgaaa |
30527757 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 144
Target Start/End: Original strand, 31767947 - 31767993
Alignment:
Q |
98 |
caaaaacacgttgaaacatttcagattttaaaattcgaatagggcgc |
144 |
Q |
|
|
|||||||||||||||| ||||| ||||||||||| | |||||||||| |
|
|
T |
31767947 |
caaaaacacgttgaaatatttcggattttaaaatccaaatagggcgc |
31767993 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 96 - 141
Target Start/End: Original strand, 52225859 - 52225904
Alignment:
Q |
96 |
tccaaaaacacgttgaaacatttcagattttaaaattcgaataggg |
141 |
Q |
|
|
|||||||||| ||||||| ||||| |||||||||||||||||||| |
|
|
T |
52225859 |
tccaaaaacatgttgaaatatttcgaattttaaaattcgaataggg |
52225904 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 158
Target Start/End: Original strand, 7439108 - 7439168
Alignment:
Q |
98 |
caaaaacacgttgaaacatttcagattttaaaattcgaatagggcgcacaagaaactcata |
158 |
Q |
|
|
|||||||||||||||| |||| |||||||| |||| ||||||| ||| | |||| |||||| |
|
|
T |
7439108 |
caaaaacacgttgaaatattttagattttagaatttgaataggacgcgcgagaatctcata |
7439168 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 144
Target Start/End: Complemental strand, 48779789 - 48779686
Alignment:
Q |
38 |
cgcgccctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagattttaaaattcgaat |
137 |
Q |
|
|
|||||||||| || ||| |||| ||||||| |||||| ||||| ||| | ||| ||| |||||||| ||||||| ||||| |||||| ||| ||||| |
|
|
T |
48779789 |
cgcgccctatgcaattttgattatagaattcgaacggaataaaaacc---tcaaaaccttcaaaaacatgttgaaatatttcgaattttagaatccgaat |
48779693 |
T |
 |
Q |
138 |
agggcgc |
144 |
Q |
|
|
||||||| |
|
|
T |
48779692 |
agggcgc |
48779686 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 24 - 158
Target Start/End: Complemental strand, 1750214 - 1750080
Alignment:
Q |
24 |
ctatgagtttttcgcgcgccctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagat |
123 |
Q |
|
|
|||||||||| ||| ||| |||||| |||| |||| |||||| ||||| |||||||||| ||| || ||||| ||| ||||||||||||||| |||| |
|
|
T |
1750214 |
ctatgagtttcccgcacgctctatactgtttggattatagaatccgaacgaaataaacaccctatacaaacctcctaaatcacgttgaaacattttagat |
1750115 |
T |
 |
Q |
124 |
tttaaaattcgaatagggcgcacaagaaactcata |
158 |
Q |
|
|
|||| ||| | |||||| ||||| ||||||||||| |
|
|
T |
1750114 |
tttagaatccaaataggacgcacgagaaactcata |
1750080 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 158
Target Start/End: Original strand, 26665441 - 26665574
Alignment:
Q |
25 |
tatgagtttttcgcgcgccctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagatt |
124 |
Q |
|
|
||||||||| ||||||||||||| |||||| ||| |||||| |||||||||||||| || |||||| || |||||| ||||||| ||||| |||| |
|
|
T |
26665441 |
tatgagtttctcgcgcgccctatgcagtttgaattatagaatccgaacggcataaacaacccataaaaatttcggaaaacatgttgaaatatttcggatt |
26665540 |
T |
 |
Q |
125 |
ttaaaattcgaatagggcgcacaagaaactcata |
158 |
Q |
|
|
||||||| | |||||| ||| | ||||||||||| |
|
|
T |
26665541 |
ttaaaatccaaataggacgcgcgagaaactcata |
26665574 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 109
Target Start/End: Original strand, 42110934 - 42111015
Alignment:
Q |
28 |
gagtttttcgcgcgccctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgtt |
109 |
Q |
|
|
|||||| ||||||||||||| ||| || |||| ||||||| ||||| ||||||||||| |||||| |||||||||||||||| |
|
|
T |
42110934 |
gagtttctcgcgcgccctatgcaggttggattatagaattcgaacgacataaacaccccataaaaacctccaaaaacacgtt |
42111015 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 155
Target Start/End: Complemental strand, 51715112 - 51715027
Alignment:
Q |
69 |
gaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagattttaaaattcgaatagggcgcacaagaaactc |
155 |
Q |
|
|
|||| |||||||||||| |||||| ||||||||| |||||| ||||||||||||||||| ||| ||||| |||||| | |||||||| |
|
|
T |
51715112 |
gaacagcataaacaccccataaaaacctccaaaa-cacgttaaaacatttcagattttagaatccgaatcgggcgcgcgagaaactc |
51715027 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 43 - 140
Target Start/End: Complemental strand, 31219295 - 31219200
Alignment:
Q |
43 |
cctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagattttaaaattcgaatagg |
140 |
Q |
|
|
||||| ||||| ||||| |||||| ||||||||||||| ||| |||||| ||||||||| || | |||||||||||||||||||||||| ||||||| |
|
|
T |
31219295 |
cctatgcagttcagattatagaatccgaacggcataaactccccataaaa-cctccaaaa-catgctgaaacatttcagattttaaaatttgaatagg |
31219200 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 158
Target Start/End: Original strand, 33513343 - 33513475
Alignment:
Q |
24 |
ctatgagtttttcgcgcgccctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagat |
123 |
Q |
|
|
||||||| || || |||||||||||||||| | ||| || ||| |||| | |||| ||||| ||||| ||||| |||||||||||||| |||| ||| |
|
|
T |
33513343 |
ctatgaggttctcacgcgccctatacagttcaaattttaaaatccgaactacgtaaaaaccca-taaaa-cctccgaaaacacgttgaaatatttaggat |
33513440 |
T |
 |
Q |
124 |
tttaaaattcgaatagggcgcacaagaaactcata |
158 |
Q |
|
|
|||| ||| ||||||||| |||||||||||||||| |
|
|
T |
33513441 |
tttagaatccgaatagggtgcacaagaaactcata |
33513475 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 127
Target Start/End: Complemental strand, 7925496 - 7925387
Alignment:
Q |
17 |
ttccattctatgagtttttcgcgcgccctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacat |
116 |
Q |
|
|
|||||| |||| ||||| ||||||||||||| | ||| || | ||||||| ||| || |||||||||| |||||| ||| ||||| ||||||||| || |
|
|
T |
7925496 |
ttccatcctataagtttctcgcgcgccctatgcggttcggaatatagaattcgaatggtataaacaccctataaaa-ccttaaaaaatacgttgaaatat |
7925398 |
T |
 |
Q |
117 |
ttcagatttta |
127 |
Q |
|
|
||||||||||| |
|
|
T |
7925397 |
ttcagatttta |
7925387 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 129
Target Start/End: Complemental strand, 15462169 - 15462065
Alignment:
Q |
24 |
ctatgagtttttcgcgcgccctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagat |
123 |
Q |
|
|
|||||||||| |||||| || ||| ||||| ||| |||||| |||||||||||||||| |||||| |||| |||| |||||| ||| ||||||||| |
|
|
T |
15462169 |
ctatgagtttctcgcgctccttatgcagttcgaattatagaatccaaacggcataaacaccccataaaaacctctaaaa-cacgtttaaatatttcagat |
15462071 |
T |
 |
Q |
124 |
tttaaa |
129 |
Q |
|
|
|||||| |
|
|
T |
15462070 |
tttaaa |
15462065 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 131
Target Start/End: Complemental strand, 20705057 - 20704969
Alignment:
Q |
43 |
cctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagattttaaaat |
131 |
Q |
|
|
||||| ||||||||||| |||||| ||||| || |||| | |||||| |||||||||| | ||| |||||||||| |||||||||| |
|
|
T |
20705057 |
cctatgcagtttagattatagaatccaaacggtatcaacatctcataaaaacctccaaaaatatgttaaaacatttcaaattttaaaat |
20704969 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 159
Target Start/End: Complemental strand, 43726624 - 43726580
Alignment:
Q |
115 |
atttcagattttaaaattcgaatagggcgcacaagaaactcataa |
159 |
Q |
|
|
||||| ||||||||||||| |||||||||| | |||||||||||| |
|
|
T |
43726624 |
atttctgattttaaaattctaatagggcgcgcgagaaactcataa |
43726580 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 158
Target Start/End: Original strand, 41945223 - 41945310
Alignment:
Q |
69 |
gaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagattttaaaattcgaatagggcgcacaagaaactcata |
158 |
Q |
|
|
||||| |||||||||||| ||||| ||| ||||| || ||| ||||||||||||||||| ||||| |||||||||| ||||||| ||||| |
|
|
T |
41945223 |
gaacgacataaacaccca-taaaaaccttcaaaa-catgttaaaacatttcagattttagaattcaaatagggcgcgcaagaaagtcata |
41945310 |
T |
 |
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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 158
Target Start/End: Complemental strand, 38303337 - 38303266
Alignment:
Q |
87 |
ataaaatcctccaaaaacacgttgaaacatttcagattttaaaattcgaatagggcgcacaagaaactcata |
158 |
Q |
|
|
|||||| ||||||||||| | ||||||||||||||||||||| || ||||||| | || | ||||||||||| |
|
|
T |
38303337 |
ataaaaacctccaaaaacgcattgaaacatttcagattttaagatccgaatagagtgcgcgagaaactcata |
38303266 |
T |
 |
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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 154
Target Start/End: Complemental strand, 39791346 - 39791218
Alignment:
Q |
24 |
ctatgagtttttcgcgcgccctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagat |
123 |
Q |
|
|
|||||||||| |||| |||| ||| | ||| | ||| |||||| ||||||||||||||||| |||||| || ||||| |||||||||| ||||| ||| |
|
|
T |
39791346 |
ctatgagtttctcgc-cgccatatcctgttaatattatagaatccgaacggcataaacaccccataaaaatcttcaaaa-cacgttgaaatatttcggat |
39791249 |
T |
 |
Q |
124 |
tttaaaattcgaatagggcgcacaagaaact |
154 |
Q |
|
|
|||| ||||| |||||| |||| ||||||| |
|
|
T |
39791248 |
tttagaattcaaataggacgcatgagaaact |
39791218 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 98 - 144
Target Start/End: Original strand, 39927526 - 39927572
Alignment:
Q |
98 |
caaaaacacgttgaaacatttcagattttaaaattcgaatagggcgc |
144 |
Q |
|
|
|||||||||||||||||||||| ||||||||||| ||| |||||||| |
|
|
T |
39927526 |
caaaaacacgttgaaacatttcggattttaaaatccgagtagggcgc |
39927572 |
T |
 |
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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 118
Target Start/End: Complemental strand, 53689152 - 53689058
Alignment:
Q |
24 |
ctatgagtttttcgcgcgccctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacattt |
118 |
Q |
|
|
||||||||||||| | ||| |||| | ||| |||| |||||| |||||| ||||||||||| |||||| | |||||| |||||||||||||| |
|
|
T |
53689152 |
ctatgagtttttcctgtgccttatataatttggattatagaatctgaacgacataaacaccccataaaaaatttcaaaaatacgttgaaacattt |
53689058 |
T |
 |
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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 140
Target Start/End: Original strand, 9603867 - 9603930
Alignment:
Q |
76 |
ataaacacccaataaaatcctccaaaaacacgttgaaacatttcagattttaaaattcgaatagg |
140 |
Q |
|
|
||||| |||| |||||| |||||||||| ||||| ||| ||||||||||||| |||| ||||||| |
|
|
T |
9603867 |
ataaaaaccccataaaa-cctccaaaaatacgttaaaatatttcagattttagaatttgaatagg |
9603930 |
T |
 |
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Target: scaffold0071 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0071
Description:
Target: scaffold0071; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 129
Target Start/End: Original strand, 23 - 127
Alignment:
Q |
24 |
ctatgagtttttcgcgcgccctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagat |
123 |
Q |
|
|
|||||||||| |||||| || ||| ||||| ||| |||||| |||||||||||||||| |||||| |||| |||| |||||| ||| ||||||||| |
|
|
T |
23 |
ctatgagtttctcgcgctccttatgcagttcgaattatagaatccaaacggcataaacaccccataaaaacctctaaaa-cacgtttaaatatttcagat |
121 |
T |
 |
Q |
124 |
tttaaa |
129 |
Q |
|
|
|||||| |
|
|
T |
122 |
tttaaa |
127 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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