View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0846_low_187 (Length: 255)
Name: NF0846_low_187
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_low_187 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 30 - 255
Target Start/End: Complemental strand, 4927173 - 4926948
Alignment:
| Q |
30 |
gaaagcttgtagaaaattgtgtgatgacttgacacttgaaagaattaaggaattaaatttattaaacttttgtatgcttcctcgaaactacagatttcta |
129 |
Q |
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| T |
4927173 |
gaaagcttgtagaaaattgtgtgatgacttgacacttgaaagaattaaggaattaaatttattaaacttttgtatgcttcctcgaaactacagatttcta |
4927074 |
T |
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| Q |
130 |
ccttgatgaaaaacaaagacgaacataacagctcatcacacatcgtgaacataaaaatttgaacacatcttttagatccactcagaaaaaaggaaatatg |
229 |
Q |
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| T |
4927073 |
ccttgatgaaaagcaaagacgaacataacagctcatcacacatcgtgaacataaaaatttgaacacatcttttagatccactcagaaaaaaggaaatatg |
4926974 |
T |
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| Q |
230 |
aataattaaataaagtatgtactctt |
255 |
Q |
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| T |
4926973 |
aataattaaataaagtatgtactctt |
4926948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 79 - 124
Target Start/End: Complemental strand, 4920847 - 4920802
Alignment:
| Q |
79 |
gaattaaatttattaaacttttgtatgcttcctcgaaactacagat |
124 |
Q |
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| T |
4920847 |
gaattaaatttattaaactttcgtatgcttcctcgaaactacagat |
4920802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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