View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0846_low_189 (Length: 253)
Name: NF0846_low_189
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_low_189 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 3 - 242
Target Start/End: Complemental strand, 15509053 - 15508814
Alignment:
| Q |
3 |
gtggattaatataaaagaaaaacctatgaaatacataaatgtacctgttttccataaatatgaatatgaatgaaagataaaaaagaagaatcttctatac |
102 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15509053 |
gtggattaatataaaagaaaaacgtatgaaatacataaatgtacctgttttccataaatatgaatatgaatgaaagataaaaaagaagaatcttctatac |
15508954 |
T |
|
| Q |
103 |
aaagctcatcttccttcccctctgagcccccttgagccaaagcacaaaggaggatgacataaataaccgcacaaccggttcttgtcaattccattattgc |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15508953 |
aaagctcatcttccttcccctctgagcccccttgagccaaagcacaaaggaggatgacataaataaccgcacaaccggttcttgtcaattccattattgc |
15508854 |
T |
|
| Q |
203 |
ttctaaattcaccaacccaacccaataattccttgttcat |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
15508853 |
ttctaaattcaccaacccaacccaataattccttgttcat |
15508814 |
T |
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