View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0846_low_19 (Length: 594)

Name: NF0846_low_19
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0846_low_19
NF0846_low_19
[»] chr2 (5 HSPs)
chr2 (401-538)||(989741-989878)
chr2 (375-498)||(824802-824925)
chr2 (539-590)||(28828962-28829013)
chr2 (384-534)||(1024899-1025049)
chr2 (384-496)||(1019368-1019480)
[»] chr7 (1 HSPs)
chr7 (375-531)||(32246822-32246978)
[»] scaffold0244 (1 HSPs)
scaffold0244 (402-452)||(6036-6086)
[»] chr1 (3 HSPs)
chr1 (393-531)||(22076310-22076448)
chr1 (402-535)||(22057047-22057180)
chr1 (405-502)||(48675488-48675585)
[»] chr3 (2 HSPs)
chr3 (384-496)||(8316439-8316551)
chr3 (205-237)||(28887383-28887415)
[»] chr4 (1 HSPs)
chr4 (470-538)||(40640934-40641003)


Alignment Details
Target: chr2 (Bit Score: 74; Significance: 1e-33; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 401 - 538
Target Start/End: Complemental strand, 989878 - 989741
Alignment:
Q  401 gtttcataatttgacccacttggagctccacgatagttgggatttggtagcacgagtgctccaatacttccctaagcttcaaaatctcaaactttatcag 500  Q
    |||||||||||||||||||||||||||| || ||| |||||||||||||| || |||||||||  ||| ||||||||||||||||||| |||||||||||    
T  989878 gtttcataatttgacccacttggagctctacaataattgggatttggtagtacaagtgctccaccactgccctaagcttcaaaatctccaactttatcag 989779  T
Q  501 gtctctcaagtcttagaatcatattcagtttatctttt 538  Q
    || | |||| | ||||||| ||||||| |||| |||||    
T  989778 gtttgtcaacttttagaataatattcaatttacctttt 989741  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 375 - 498
Target Start/End: Original strand, 824802 - 824925
Alignment:
Q  375 caacacccttatgataaaattcctacgtttcataatttgacccacttggagctccacgatagttgggatttggtagcacgagtgctccaatacttcccta 474  Q
    |||| |||||||||| | |||||||| |||||||||||||||||| ||||||||||| ||   | |||||||||||||| | |||||||  |||||||||    
T  824802 caacgcccttatgatgacattcctacctttcataatttgacccacctggagctccactatgtattggatttggtagcacaactgctccaccacttcccta 824901  T
Q  475 agcttcaaaatctcaaactttatc 498  Q
    ||||||| |||||  |||||||||    
T  824902 agcttcagaatcttgaactttatc 824925  T

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Target: chr2; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 539 - 590
Target Start/End: Complemental strand, 28829013 - 28828962
Alignment:
Q  539 attcttccaccttacaactcaataacaacagattcattacctcagaaaactg 590  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  28829013 attcttccaccttacaactcaataacaaccgattcattacctcagaaaactg 28828962  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 384 - 534
Target Start/End: Complemental strand, 1025049 - 1024899
Alignment:
Q  384 tatgataaaattcctacgtttcataatttgacccacttggagctccacgatagttgggatttggtagcacgagtgctccaatacttccctaagcttcaaa 483  Q
    ||||| || |||||||  ||||||||||||||  |||||||||||||| | |||||| ||||| ||  || ||| || ||  ||| ||||||||||||||    
T  1025049 tatgaaaatattcctatctttcataatttgacatacttggagctccacaacagttggcatttgatattacaagttcttcaccactgccctaagcttcaaa 1024950  T
Q  484 atctcaaactttatcaggtctctcaagtcttagaatcatattcagtttatc 534  Q
    |||||||| ||||  |||| | | |||| | |||||||||||  |||||||    
T  1024949 atctcaaaatttacgaggtttgttaagtttaagaatcatatttggtttatc 1024899  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 384 - 496
Target Start/End: Complemental strand, 1019480 - 1019368
Alignment:
Q  384 tatgataaaattcctacgtttcataatttgacccacttggagctccacgatagttgggatttggtagcacgagtgctccaatacttccctaagcttcaaa 483  Q
    |||||| | |||||||  ||||| ||||||| | |||||||||||  | |||| |||  |||||||| || ||| |||||  ||| ||||||||||||||    
T  1019480 tatgatgatattcctatctttcaaaatttgatctacttggagctctgcaataggtggcgtttggtagtacaagttctccaccactgccctaagcttcaaa 1019381  T
Q  484 atctcaaacttta 496  Q
    |||||||||||||    
T  1019380 atctcaaacttta 1019368  T

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Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 375 - 531
Target Start/End: Original strand, 32246822 - 32246978
Alignment:
Q  375 caacacccttatgataaaattcctacgtttcataatttgacccacttggagctccacgatagttgggatttggtagcacgagtgctccaatacttcccta 474  Q
    ||||||||||| ||| | |||||||  ||||||||||||||||| |||  ||||  | ||| |||||| ||||||| |  |||||||||| ||| |||||    
T  32246822 caacacccttacgatgatattcctatttttcataatttgacccagttgacgctctgctataattgggagttggtaggattagtgctccaacactgcccta 32246921  T
Q  475 agcttcaaaatctcaaactttatcaggtctctcaagtcttagaatcatattcagttt 531  Q
     |||||||||||||||||||||| |||| | | |||||| ||| ||| |||| ||||    
T  32246922 tgcttcaaaatctcaaactttataaggtttgttaagtctaagattcacattcggttt 32246978  T

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Target: scaffold0244 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0244
Description:

Target: scaffold0244; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 402 - 452
Target Start/End: Complemental strand, 6086 - 6036
Alignment:
Q  402 tttcataatttgacccacttggagctccacgatagttgggatttggtagca 452  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  6086 tttcataatttgacccacttggaactccacaatagttgggatttggtagca 6036  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 393 - 531
Target Start/End: Original strand, 22076310 - 22076448
Alignment:
Q  393 attcctacgtttcataatttgacccacttggagctccacgatagttgggatttggtagcacgagtgctccaatacttccctaagcttcaaaatctcaaac 492  Q
    |||||||  ||||||||||||||| ||||||| ||||||||||||||| |||||||||||| ||| || | | |||  |||||| ||||| ||||| | |    
T  22076310 attcctatctttcataatttgaccgacttggaactccacgatagttggaatttggtagcacaagtacttctacactgtcctaaggttcaacatctcgatc 22076409  T
Q  493 tttatcaggtctctcaagtcttagaatcatattcagttt 531  Q
    |||| ||||| | | || | | | |||||||||||||||    
T  22076410 tttaccaggtttgttaaatataataatcatattcagttt 22076448  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 402 - 535
Target Start/End: Original strand, 22057047 - 22057180
Alignment:
Q  402 tttcataatttgacccacttggagctccacgatagttgggatttggtagcacgagtgctccaatacttccctaagcttcaaaatctcaaactttatcagg 501  Q
    ||||||||||||||||||||| | |||| |||||||||||||| |||||||| ||| || |   |||  |||||| ||||| ||||| ||||||| ||||    
T  22057047 tttcataatttgacccacttgcaactccgcgatagttgggattgggtagcacaagtacttctgcactgtcctaaggttcaacatctcgaactttaccagg 22057146  T
Q  502 tctctcaagtcttagaatcatattcagtttatct 535  Q
    | | | || | | | |||||||||||||||||||    
T  22057147 tttgttaaatttaataatcatattcagtttatct 22057180  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 502
Target Start/End: Complemental strand, 48675585 - 48675488
Alignment:
Q  405 cataatttgacccacttggagctccacgatagttgggatttggtagcacgagtgctccaatacttccctaagcttcaaaatctcaaactttatcaggt 502  Q
    ||||||||||| ||||||| | || || ||| |||||||| ||||  || || ||||||  ||| |||||| |||||||||||| | |||||||||||    
T  48675585 cataatttgactcacttggtgatcaacaatatttgggattcggtattacaagcgctccaccactgccctaaacttcaaaatctcgagctttatcaggt 48675488  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 384 - 496
Target Start/End: Original strand, 8316439 - 8316551
Alignment:
Q  384 tatgataaaattcctacgtttcataatttgacccacttggagctccacgatagttgggatttggtagcacgagtgctccaatacttccctaagcttcaaa 483  Q
    |||||| | |||||||  ||||| ||||||||| |||||||||||  | |||| |||  |||||||| || ||| |||||  ||| ||||||||||||||    
T  8316439 tatgatgatattcctatctttcaaaatttgaccaacttggagctctgcaataggtggcgtttggtagtacaagttctccaccactgccctaagcttcaaa 8316538  T
Q  484 atctcaaacttta 496  Q
    |||||||||||||    
T  8316539 atctcaaacttta 8316551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 28887415 - 28887383
Alignment:
Q  205 tctattttcttaaattattattggtgtcgacat 237  Q
    |||||||||||||||||||||||||||| ||||    
T  28887415 tctattttcttaaattattattggtgtctacat 28887383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 470 - 538
Target Start/End: Original strand, 40640934 - 40641003
Alignment:
Q  470 ccctaagcttcaaaatctcaaactttatcaggtctctcaagtctt-agaatcatattcagtttatctttt 538  Q
    |||||||||||||| ||||||||||| |||||| | | |||| || ||||||||||| ||||||||||||    
T  40640934 ccctaagcttcaaattctcaaactttgtcaggtttgtgaagttttaagaatcatatttagtttatctttt 40641003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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