View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0846_low_197 (Length: 251)

Name: NF0846_low_197
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0846_low_197
NF0846_low_197
[»] chr4 (1 HSPs)
chr4 (1-223)||(36070411-36070633)
[»] chr6 (2 HSPs)
chr6 (56-128)||(29029571-29029643)
chr6 (126-183)||(29029690-29029750)


Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 36070411 - 36070633
Alignment:
Q  1 ctccatcatcatcaccatcgtcgccatcatcatccttttcaccattttcttctatttcttcattattagaagaatgcatttgatccgatcctaatgcaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  36070411 ctccatcatcatcaccatcgtcgccatcatcatccttttcaccattttcttctacttcttcattattagaagaatgcatttgatccgatcctaatgcaaa 36070510  T
Q  101 caaattaacaagataataaatatatataagaaaatacaagaagcagccacattattgagataagattaagaaagaagaaaaaacacttaccaacttcata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36070511 caaattaacaagataataaatatatataagaaaatacaagaagcagccacattattgagataagattaagaaagaagaaaaaacacttaccaacttcata 36070610  T
Q  201 tttgggttgctcctgcaagttgt 223  Q
    |||||||||||||||||||||||    
T  36070611 tttgggttgctcctgcaagttgt 36070633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 128
Target Start/End: Original strand, 29029571 - 29029643
Alignment:
Q  56 ttcttcattattagaagaatgcatttgatccgatcctaatgcaaacaaattaacaagataataaatatatata 128  Q
    ||||||||||| |||   |||||||||||| ||| ||||||||||||||| | ||||||||||||||||||||    
T  29029571 ttcttcattatcagacatatgcatttgatctgattctaatgcaaacaaataagcaagataataaatatatata 29029643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 183
Target Start/End: Original strand, 29029690 - 29029750
Alignment:
Q  126 ataagaaaatacaagaagcagccac---attattgagataagattaagaaagaagaaaaaa 183  Q
    |||||||||||||||||||| | |    |||||||||||||||||||||| ||||||||||    
T  29029690 ataagaaaatacaagaagcaacaattatattattgagataagattaagaaggaagaaaaaa 29029750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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