View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0846_low_2 (Length: 790)
Name: NF0846_low_2
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_low_2 |
 | |
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| [»] chr4 (12 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 490; Significance: 0; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 1 - 790
Target Start/End: Complemental strand, 4028198 - 4027393
Alignment:
| Q |
1 |
tgtcattgtcacatgcttcatacagataattccagtatgtaaagtgtttagcaattcaatgtttgcccctgctattttatatttaaataatggtgacatt |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| ||||||| |||| ||||| |||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
4028198 |
tgtcattgtcagatgcttcatacagataattccagcatgtaaattgttaagcaactcaacgtttgcccctgctattttatatttaaataatggtgacatt |
4028099 |
T |
|
| Q |
101 |
aatagcgttgta------tacagatccaacgctatgtgggagcgggagtgttaatgtgtatgagttcacactttaaactgcaaggacaatgacattcata |
194 |
Q |
| |
|
|||| || || |||||||| || ||| |||||||| ||| ||||||||| ||||||||||||||||||||||| |||||||||||||| |
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|
| T |
4028098 |
aatatttttttaataatatacagatctaatgctctgtgggag------tgtgaatgtgtattagttcacactttaaactgcaaggtcaatgacattcata |
4028005 |
T |
|
| Q |
195 |
tgagagaaagttgaatcagatctctataagccaaatcattaagggtcggtaattgctttctttagggtatgaccattaattttgctttctgtgata---- |
290 |
Q |
| |
|
|||| |||||| |||||||||||||| ||||||| |||| | |||| |||||||||||||| ||| |||| ||||||||||||||||||||||| |
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| T |
4028004 |
tgagtgaaagtcgaatcagatctctagcagccaaagcattcaaggtcagtaattgctttcttcaggctatggccattaattttgctttctgtgatctttt |
4027905 |
T |
|
| Q |
291 |
------atttcttttctctttcgta----taataaccttgtgtt-cccttattgcaattttcaaggttctagagacgtagaaagattgttcagagtgcat |
379 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||| ||||||||| ||||||| |||| ||||||||| |||||||| ||||||||||||| |
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|
| T |
4027904 |
catttcatttcttttctctttcgttccggtaatattcttgtgtttcccttattgtaattttcgaggtcctagagacgaagaaagatcgttcagagtgcat |
4027805 |
T |
|
| Q |
380 |
ttgttccaattcaatggcgtatttgtcttctggagcttctcaattaatttattttgtaatgtcttcttattaaattcgaatttgtgttacgaattgatcc |
479 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
4027804 |
ttgttccaattcaatggcgtatttgttttccagagcttctcaaataatttatgctgtaatgtctgcttattaaattcgaatttgtgttacgaattgatcc |
4027705 |
T |
|
| Q |
480 |
tgaaactttaaaattattcaatgaaaccgtatgtaatcatgatttttacctt-ttcgttctatatttgtagatattgtatgagctgtgaagtaagaccaa |
578 |
Q |
| |
|
||||||||||| ||| ||||||||||| ||||||||||||| ||||| ||| || | |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4027704 |
tgaaactttaagatttttcaatgaaacagtatgtaatcatggttttttacttcttagctctatatttgtagatattgtatgagctgtgaagtaagaccaa |
4027605 |
T |
|
| Q |
579 |
aacctttttgtgaccttccttatattctatgtcctgcacacttatgtagaaatcattgtataatagaactaaatgttaatttgcagatattagagcaaac |
678 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
4027604 |
aacctttttgtgaccttccttatattctatgtcctgcacacttatgtagaaatcattgtataatagaactaaatattaatttgcagatattagagcaaac |
4027505 |
T |
|
| Q |
679 |
tatcattttggtccttaatgtcaagaattgggacttgaaaaatttctcatgtgtaggtcagagggactatgactaataagcttttatgagttttaacaac |
778 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4027504 |
tatcattttggtccttaatgtcaagaattgggacttgaaaaatttctcatgtgtaggtcagagggactatgactaataagcttttatgagttttaacaac |
4027405 |
T |
|
| Q |
779 |
ttagaattgcct |
790 |
Q |
| |
|
|||||||||||| |
|
|
| T |
4027404 |
ttagaattgcct |
4027393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 192 - 790
Target Start/End: Original strand, 3950871 - 3951483
Alignment:
| Q |
192 |
atatgagagaaagttgaatcagatctctataagccaaatcattaagggtcggtaattgctttctttagggtatgaccattaattttgctttctgtgataa |
291 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||| |||| | |||| | |||||||||||| | ||||||| ||||||| ||| ||||||| |
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|
| T |
3950871 |
atatgggagaaagttgaatcagatctctagcagccaaaacattgaaggtcagaaattgctttcttattgctatgaccgttaatttaattttttgtgatat |
3950970 |
T |
|
| Q |
292 |
tttcttttc---------tctttcgta----taataaccttgtgtt-cccttattgcaattttcaaggttctagagacgtagaaagattgttcagagtgc |
377 |
Q |
| |
|
||||||||| | |||||| ||||||||||||||| ||||||||| | ||||||||||||||||| ||||||||||||| ||||| |
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|
| T |
3950971 |
tttcttttcatttttttctgtttcgttccgttaataaccttgtgtttcccttattgtgacgttcaaggttctagagac--agaaagattgttcgtagtgc |
3951068 |
T |
|
| Q |
378 |
atttgttccaattcaatggcgtatttgtcttctggagcttctcaattaatttattttgtaatg--tcttcttattaaattcgaatttgtg-ttacgaatt |
474 |
Q |
| |
|
| |||||||||| ||||||| |||||| |||||||||| |||||| ||| ||| ||||| ||| ||||| || ||| |||||||| ||| ||||| |
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|
| T |
3951069 |
acttgttccaatccaatggcatatttgccttctggagcctctcaaacaatatatgctgtaaatactctgcttatcaatttcaaatttgtggttatgaatt |
3951168 |
T |
|
| Q |
475 |
gatcctgaaactttaaaattattcaatgaaaccgtatgtaatcatgatttttaccttttcgttctatatttgtagatattgtatgagctgtgaagtaaga |
574 |
Q |
| |
|
|| |||||| ||| ||| |||| || || ||||||||| || |||| | |||||||||||||||||||||| ||||| | |||||||| |
|
|
| T |
3951169 |
aatgctgaaaattttcgatttatcaacgagacagtatgtaattatagttttca-------gttctatatttgtagatattgttagagctttaaagtaaga |
3951261 |
T |
|
| Q |
575 |
ccaaaacctttttgtgaccttcct---tatattctatgtcctgcacactt--atgtagaaatcattgtataatagaactaaatgttaatt-tgcagatat |
668 |
Q |
| |
|
| ||||| |||||||||||||| | ||||| ||||||||||||||| ||| ||||| | |||||||||| |||||| || | | |||||| || |
|
|
| T |
3951262 |
caaaaacttttttgtgaccttcttccatatatataatgtcctgcacacttttatgcagaaaccgttgtataataatactaaaaatttactctgcagaaat |
3951361 |
T |
|
| Q |
669 |
tagagcaaactatcattttggtccttaatgtcaagaattgggacttgaaaaatt--tctcatgtgtaggtcagagggactatgactaataagcttttatg |
766 |
Q |
| |
|
||||| ||||| ||||||| ||||||| |||||||||||||||||||||| || || || |||||| || |||||| | | || | ||| |||||||| |
|
|
| T |
3951362 |
tagagtaaact--cattttgttccttaaagtcaagaattgggacttgaaaacttcgtcacacgtgtagctcggagggattttaaccagtaaacttttatg |
3951459 |
T |
|
| Q |
767 |
agttttaacaacttagaattgcct |
790 |
Q |
| |
|
||||||||||||||||| |||||| |
|
|
| T |
3951460 |
agttttaacaacttagagttgcct |
3951483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 309 - 474
Target Start/End: Complemental strand, 4005410 - 4005242
Alignment:
| Q |
309 |
ataataaccttgtgtt-cccttattgcaattttcaaggttctagagacgtagaaagattgttcagagtgcatttgttccaattcaatggcgtatttgtct |
407 |
Q |
| |
|
|||||||||||||||| |||||||||| | |||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||| ||||| ||| |
|
|
| T |
4005410 |
ataataaccttgtgtttcccttattgcgttattcaaggttctagagacgaagaaagattgttcagagtgcacttgttccagttcaatggcatatttatct |
4005311 |
T |
|
| Q |
408 |
tctggagcttctcaattaatttattttgtaat--gtcttcttattaaattcgaatttgtgttacgaatt |
474 |
Q |
| |
|
|||||| |||||||| |||| ||| |||||| ||| ||||||||||||||||||||||| ||||| |
|
|
| T |
4005310 |
tctggaacttctcaactaatatatgctgtaattgctctgtttattaaattcgaatttgtgttatgaatt |
4005242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 323 - 464
Target Start/End: Complemental strand, 4013641 - 4013500
Alignment:
| Q |
323 |
ttcccttattgcaattttcaaggttctagagacgtagaaagattgttcagagtgcatttgttccaattcaatggcgtatttgtcttctggagcttctcaa |
422 |
Q |
| |
|
||||||||||| || |||||||||||||||||| ||||||||||||| | ||| | |||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
4013641 |
ttcccttattgtgatgttcaaggttctagagacgaagaaagattgttccgtgtgaaattgttccaattcaatggcgtatttgtcttccggagcttctcaa |
4013542 |
T |
|
| Q |
423 |
ttaatttattttgtaatgtcttcttattaaattcgaatttgt |
464 |
Q |
| |
|
|||| ||| |||||| ||| |||||| | ||||||||||| |
|
|
| T |
4013541 |
ataatatatgctgtaatctctgcttattgatttcgaatttgt |
4013500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 309 - 490
Target Start/End: Complemental strand, 3991349 - 3991167
Alignment:
| Q |
309 |
ataataaccttgtgtt-cccttattgcaattttcaaggttctagagacgtagaaagattgttcagagtgcatttgttccaattcaatggcgtatttgtct |
407 |
Q |
| |
|
|||||||||||||||| ||||||||| || |||||||||||| ||||| ||||||||||||||||||| | ||||||||||||||||||| |||||||| |
|
|
| T |
3991349 |
ataataaccttgtgtttcccttattgatatattcaaggttctacagacgaagaaagattgttcagagtgaagttgttccaattcaatggcgcatttgtct |
3991250 |
T |
|
| Q |
408 |
tctggagcttc-tcaattaatttattttgtaatgtcttcttattaaattcgaatttgtgttacgaattgatcctgaaactttaa |
490 |
Q |
| |
|
|| |||||||| |||| |||| ||| |||||| ||| |||||| | || |||||| ||||| |||| || || ||||||||| |
|
|
| T |
3991249 |
tccggagcttcatcaa-taatatatgctgtaatctctgcttattgattttgaatttccgttacaaattaatgctaaaactttaa |
3991167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 535 - 596
Target Start/End: Complemental strand, 4013366 - 4013305
Alignment:
| Q |
535 |
gttctatatttgtagatattgtatgagctgtgaagtaagaccaaaacctttttgtgaccttc |
596 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||| |
|
|
| T |
4013366 |
gttctatatttgtagatattgtatgagctgtagagtaagaccaaaacatttttgttaccttc |
4013305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 702 - 790
Target Start/End: Complemental strand, 4013184 - 4013094
Alignment:
| Q |
702 |
agaattgggacttgaaaaatttctca--tgtgtaggtcagagggactatgactaataagcttttatgagttttaacaacttagaattgcct |
790 |
Q |
| |
|
||||||||||||||||||| | |||| ||||||| | ||| || ||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
4013184 |
agaattgggacttgaaaaaatgctcacatgtgtagctttgagagattatgactaataagcttttatgagttttaatgacttagaattgcct |
4013094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 553 - 644
Target Start/End: Complemental strand, 3990654 - 3990563
Alignment:
| Q |
553 |
ttgtatgagctgtgaagtaagaccaaaacctttttgtgaccttccttatattctatgtcctgcacac--ttatgta-gaaatcattgtataatag |
644 |
Q |
| |
|
||||||||||| ||||| ||||||||||| ||||||||| || ||||||||| |||| ||||||| ||||| | |||||||||||||||||| |
|
|
| T |
3990654 |
ttgtatgagctttgaagaaagaccaaaacttttttgtgaact---ttatattctctgtcttgcacacttttatgcaggaaatcattgtataatag |
3990563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 216
Target Start/End: Complemental strand, 3796928 - 3796851
Alignment:
| Q |
147 |
aatgtgtatgagttcacactttaaactgcaaggacaatgacatt--------catatgagagaaagttgaatcagatc |
216 |
Q |
| |
|
|||||||||||||||||||||| || ||||||| |||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
3796928 |
aatgtgtatgagttcacacttttaaatgcaaggtcaatgacattgcttcttccatatgatagaaagttgaatcagatc |
3796851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 252
Target Start/End: Original strand, 3961099 - 3961159
Alignment:
| Q |
192 |
atatgagagaaagttgaatcagatctctataagccaaatcattaagggtcggtaattgctt |
252 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||||| | ||| |||||||||| |
|
|
| T |
3961099 |
atatgagagaaagttgaaacagatctctagcagccaaatcattgaaggttagtaattgctt |
3961159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 4014019 - 4013923
Alignment:
| Q |
1 |
tgtcattgtcacatgcttcatacagataattccagtatgtaaagtgtttagcaattcaatgtttgcccctgctattttatatttaaataatggtgac |
97 |
Q |
| |
|
||||||||||||||| || ||||||||||||||| || || | |||| |||| |||| ||||| | |||| ||||| ||||| |||||||||||| |
|
|
| T |
4014019 |
tgtcattgtcacatggttgatacagataattccatcatctatacagtttggcaagtcaacgtttgactctgcaattttttatttgaataatggtgac |
4013923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 104
Target Start/End: Original strand, 3950699 - 3950786
Alignment:
| Q |
17 |
ttcatacagataattccagtatgtaaagtgtttagcaattcaatgtttgcccctgctattttatatttaaataatggtgacattaata |
104 |
Q |
| |
|
|||||||||||| |||||| |||| | ||||| |||| |||| |||||||||||||||||||| | ||||||| ||| ||||||| |
|
|
| T |
3950699 |
ttcatacagatatttccagcatgtgtactgtttggcaagtcaacttttgcccctgctattttatacctgaataatgatgagattaata |
3950786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 310 - 420
Target Start/End: Complemental strand, 13400591 - 13400482
Alignment:
| Q |
310 |
taataaccttgtgtt-cccttattgcaattttcaaggttctagagacgtagaaagattgttcagagtgcatttgttccaattcaatggcgtatttgtctt |
408 |
Q |
| |
|
||||||||||||||| |||||||||| || ||||||||||| ||||| |||||||||||||| || || |||||||||| ||||||| ||||| |||| |
|
|
| T |
13400591 |
taataaccttgtgtttcccttattgcgatgttcaaggttcttgagacaaagaaagattgttcatagcgc--ttgttccaatccaatggcatatttttctt |
13400494 |
T |
|
| Q |
409 |
ctggagcttctc |
420 |
Q |
| |
|
||||||| |||| |
|
|
| T |
13400493 |
ctggagcctctc |
13400482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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