View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0846_low_20 (Length: 589)
Name: NF0846_low_20
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 29 - 547
Target Start/End: Complemental strand, 6507616 - 6507098
Alignment:
| Q |
29 |
atatccttcttcttcttctgatgaagacgataccaattttcacaatgttgttgatcctccttttgatgttcaaagaacacaaccaattaccaatcaaaat |
128 |
Q |
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| T |
6507616 |
atatccttcttcttcttctgatgaagatgataccaattttcacaatgttgttgatcctccttttgatgttcaaagaacacaaccaattaccaatcaaaat |
6507517 |
T |
|
| Q |
129 |
agcctctctcagcttgattctaattctcatttgaacaatgacaatttgttattctctaatgattataataactcaggctatcttgaaagcattgttcctg |
228 |
Q |
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| T |
6507516 |
accctctctcagcttgattctaattctcatttgaacaatgacaatttgttattctctaatgattataataactcaggctatcttgaaagcattgttcctg |
6507417 |
T |
|
| Q |
229 |
ttaattgcttcaaacctatttccaacacaaacaattcaaactttgatgatcataggagtaatgcaagtgattcaagtgaacaccaaaatgttgttgattc |
328 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6507416 |
ttaattgcttcaaacctatttccaacaccaacaattcaaactttgatgatcatagtagtaatgcaagtgattcaagtgaacaccaaaatgttgttgattc |
6507317 |
T |
|
| Q |
329 |
cattagcacaacaaacttcatgcatggtcaatcattttttgactacactccattctctcaagaagcatataacattaacacaagtgattatagtgaagga |
428 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
6507316 |
catttgcacaacaaacttcatgcatggtcaatcattttttgactacactccattctctcaagaagcatataacattaacacaagtaattatagtgaagga |
6507217 |
T |
|
| Q |
429 |
ttatgggattgcaattacaatgaactttcagctatttttaaccaaccaccaaggagtgaaattccaagctatggactaatgacaactcaagatgtctctt |
528 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6507216 |
ttatgggattgcaattacaatgaactttcagctatttttaaccaaccaccaaggagtgaaattccaagctatggactaatgacaactcaagatgtctctt |
6507117 |
T |
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| Q |
529 |
caactacctattcatctca |
547 |
Q |
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||||||||||||| ||||| |
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| T |
6507116 |
caactacctattcttctca |
6507098 |
T |
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