View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0846_low_203 (Length: 251)
Name: NF0846_low_203
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_low_203 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 139; Significance: 8e-73; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 1748690 - 1748828
Alignment:
| Q |
1 |
acattcatgccattgaatttttcccaaaacatattgtagtaatgcacatcaaggactactttgttgaagccactaacaaatgagagaagagctttagaat |
100 |
Q |
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| T |
1748690 |
acattcatgccattgaatttttcccaaaacatattgtagtaatgcacatcaaggactactttgttgaagccactaacaaatgagagaagagctttagaat |
1748789 |
T |
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| Q |
101 |
ctccatccaatggatttgacatgatcacataagcctctg |
139 |
Q |
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| T |
1748790 |
ctccatccaatggatttgacatgatcacataagcctctg |
1748828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 1738835 - 1738967
Alignment:
| Q |
1 |
acattcatgccattgaatttttcccaaaacatattgtagtaatgcacatcaaggactactttgttgaagccactaacaaatgagagaagagctttagaat |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||| | ||||||||||||||| ||| |||| |
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| T |
1738835 |
acattcatgccattgaatttgtcccaaaacatattgtagtaatgcacatcaaggactactttatcaaagcctttgacaaatgagagaagaagtttggaat |
1738934 |
T |
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| Q |
101 |
ctccatccaatggatttgacatgatcacataag |
133 |
Q |
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| T |
1738935 |
ctgtggccaatgggtttgacatgatcacataag |
1738967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 1717338 - 1717470
Alignment:
| Q |
1 |
acattcatgccattgaatttttcccaaaacatattgtagtaatgcacatcaaggactactttgttgaagccactaacaaatgagagaagagctttagaat |
100 |
Q |
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| T |
1717338 |
acattcatgccattgaatttgtccgaatacaaattgtagtaatgcacatcaaggactactttatcaaagcctttgacaaatgagagaagaagtttagaat |
1717437 |
T |
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| Q |
101 |
ctccatccaatggatttgacatgatcacataag |
133 |
Q |
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| T |
1717438 |
ctgtggccaatggatttgacatgatcacataag |
1717470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 33 - 134
Target Start/End: Original strand, 1754038 - 1754139
Alignment:
| Q |
33 |
attgtagtaatgcacatcaaggactactttgttgaagccactaacaaatgagagaagagctttagaatctccatccaatggatttgacatgatcacataa |
132 |
Q |
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|||||||||||||||||||||||| ||||||||||| ||| | |||||||||||||| ||||||||||| |||||||||| |||||||| ||||||||| |
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| T |
1754038 |
attgtagtaatgcacatcaaggacaactttgttgaatccagtgacaaatgagagaagtactttagaatctgcatccaatgggtttgacattatcacataa |
1754137 |
T |
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| Q |
133 |
gc |
134 |
Q |
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|| |
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| T |
1754138 |
gc |
1754139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 222 - 251
Target Start/End: Complemental strand, 35967087 - 35967058
Alignment:
| Q |
222 |
tgtttagagtgtttgcttgttcattgtaat |
251 |
Q |
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| T |
35967087 |
tgtttagagtgtttgcttgttcattgtaat |
35967058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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