View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0846_low_206 (Length: 251)
Name: NF0846_low_206
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_low_206 |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 30 - 247
Target Start/End: Original strand, 12287627 - 12287844
Alignment:
| Q |
30 |
cgaggtgagtctcttaattgttacacgacgaagacagtgaaagataacgatgattgtaggaaaaactcgagttttctttcatggaatgaaaagtttttgt |
129 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
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| T |
12287627 |
cgaggtgagtctcttaattgttacacgacgaagacagtgaaagataacgatgattgtaggaaaaactcgagttttctttcatggaatgagaagtttttat |
12287726 |
T |
|
| Q |
130 |
tgaacatgccattgcatgcaaggtcaatcacgtttgaggtgcaatgcaagaagtttaaaagtgttcgtcctattggggtggcaagaattgccgtttcgga |
229 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
12287727 |
taaacatgccattgcatgcaaggtcaatcacgtttgaggtgcaatgcaagaagtttaaaagtgttcgacctattggggtggcaagaatcgccgtttcgga |
12287826 |
T |
|
| Q |
230 |
tattctaaacggggctga |
247 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
12287827 |
tattctaaacggggctga |
12287844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 30 - 243
Target Start/End: Original strand, 12270961 - 12271174
Alignment:
| Q |
30 |
cgaggtgagtctcttaattgttacacgacgaagacagtgaaagataacgatgattgtaggaaaaactcgagttttctttcatggaatgaaaagtttttgt |
129 |
Q |
| |
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|||||||||||||||||||||||||| ||||| || ||||||||||| ||| ||||| |||||||||| |||||||||||||||||||| |||||||||| |
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|
| T |
12270961 |
cgaggtgagtctcttaattgttacacaacgaaaacggtgaaagataatgataattgtgggaaaaactcaagttttctttcatggaatgagaagtttttgt |
12271060 |
T |
|
| Q |
130 |
tgaacatgccattgcatgcaaggtcaatcacgtttgaggtgcaatgcaagaagtttaaaagtgttcgtcctattggggtggcaagaattgccgtttcgga |
229 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
12271061 |
tgaacatgccattgcatgcaaggtcaatcacgtttgaggtgcaatgcaagaagttcaaaagtgttcgccctattggggtggcaagaatcgccgtttcgga |
12271160 |
T |
|
| Q |
230 |
tattctaaacgggg |
243 |
Q |
| |
|
|||||||||||||| |
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| T |
12271161 |
tattctaaacgggg |
12271174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 30 - 235
Target Start/End: Original strand, 12256957 - 12257162
Alignment:
| Q |
30 |
cgaggtgagtctcttaattgttacacgacgaagacagtgaaagataacgatgattgtaggaaaaactcgagttttctttcatggaatgaaaagtttttgt |
129 |
Q |
| |
|
|||||||||||||||||||||||||| || || || ||||||||||| ||| ||||| ||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
12256957 |
cgaggtgagtctcttaattgttacacaacaaaaacggtgaaagataatgataattgtgggaaaaactcgagttttctttcatggaatgagaagtttttgt |
12257056 |
T |
|
| Q |
130 |
tgaacatgccattgcatgcaaggtcaatcacgtttgaggtgcaatgcaagaagtttaaaagtgttcgtcctattggggtggcaagaattgccgtttcgga |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
12257057 |
tgaacatgccattgcatgcaaggtcaatcacttttgaggtgcaatgcaagaagtttaaaagtgtacgtcctattggggtggcaagaattgctctttcgga |
12257156 |
T |
|
| Q |
230 |
tattct |
235 |
Q |
| |
|
| |||| |
|
|
| T |
12257157 |
ttttct |
12257162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 30 - 235
Target Start/End: Original strand, 12264349 - 12264554
Alignment:
| Q |
30 |
cgaggtgagtctcttaattgttacacgacgaagacagtgaaagataacgatgattgtaggaaaaactcgagttttctttcatggaatgaaaagtttttgt |
129 |
Q |
| |
|
|||||||||||||||||||||||||| || || || ||||||||||| ||| ||||| ||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
12264349 |
cgaggtgagtctcttaattgttacacaacaaaaacggtgaaagataatgataattgtgggaaaaactcgagttttctttcatggaatgagaagtttttgt |
12264448 |
T |
|
| Q |
130 |
tgaacatgccattgcatgcaaggtcaatcacgtttgaggtgcaatgcaagaagtttaaaagtgttcgtcctattggggtggcaagaattgccgtttcgga |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
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|
| T |
12264449 |
tgaacatgccattgcatgcaaggtcaatcacttttgaggtgcaatgcaagaagtttaaaagtgtacgtcctattggggtggcaagaattgctctttcgga |
12264548 |
T |
|
| Q |
230 |
tattct |
235 |
Q |
| |
|
| |||| |
|
|
| T |
12264549 |
ttttct |
12264554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 30 - 235
Target Start/End: Original strand, 12267048 - 12267256
Alignment:
| Q |
30 |
cgaggtgagtctcttaattgttacacgacgaagacagtgaaagataac---gatgattgtaggaaaaactcgagttttctttcatggaatgaaaagtttt |
126 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||||||||| ||| ||||| | ||||| |||||||| |||||||||||||||||||||| |
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|
| T |
12267048 |
cgaggtgagtctcttaattgttacacaacgaagacgctgaaagataacaacgataattgtggaaaaaattcgagtttcctttcatggaatgaaaagtttt |
12267147 |
T |
|
| Q |
127 |
tgttgaacatgccattgcatgcaaggtcaatcacgtttgaggtgcaatgcaagaagtttaaaagtgttcgtcctattggggtggcaagaattgccgtttc |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
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|
| T |
12267148 |
tgttgaacatgccattgcatgcaaggtcaattacgtttgaggtgcaatgcaagaagtttaaaagtgttcgtcctattggggtagcaagaattggcgtttc |
12267247 |
T |
|
| Q |
227 |
ggatattct |
235 |
Q |
| |
|
|||| |||| |
|
|
| T |
12267248 |
ggattttct |
12267256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 30 - 235
Target Start/End: Original strand, 12282774 - 12282982
Alignment:
| Q |
30 |
cgaggtgagtctcttaattgttacacgacgaagacagtgaaagataac---gatgattgtaggaaaaactcgagttttctttcatggaatgaaaagtttt |
126 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||||||||| ||| ||||| | ||||| |||||||| |||||||||||||||||||||| |
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|
| T |
12282774 |
cgaggtgagtctcttaattgttacacaacgaagacgctgaaagataacaacgataattgtggaaaaaattcgagtttcctttcatggaatgaaaagtttt |
12282873 |
T |
|
| Q |
127 |
tgttgaacatgccattgcatgcaaggtcaatcacgtttgaggtgcaatgcaagaagtttaaaagtgttcgtcctattggggtggcaagaattgccgtttc |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
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|
| T |
12282874 |
tgttgaacatgccattgcatgcaaggtcaattacgtttgaggtgcaatgcaagaagtttaaaagtgttcgtcctattggggtagcaagaattggcgtttc |
12282973 |
T |
|
| Q |
227 |
ggatattct |
235 |
Q |
| |
|
|||| |||| |
|
|
| T |
12282974 |
ggattttct |
12282982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 30 - 247
Target Start/End: Original strand, 29197683 - 29197900
Alignment:
| Q |
30 |
cgaggtgagtctcttaattgttacacgacgaagacagtgaaagataacgatgattgtaggaaaaactcgagttttctttcatggaatgaaaagtttttgt |
129 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||||| |||| || |||||| | |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29197683 |
cgaggtgagtctcttaattgttacacaacgaaaacagtgaaaaataaagacgattgtggaaaaaactcgagttttctttcatggaatgaaaagtttttgt |
29197782 |
T |
|
| Q |
130 |
tgaacatgccattgcatgcaaggtcaatcacgtttgaggtgcaatgcaagaagtttaaaagtgttcgtcctattggggtggcaagaattgccgtttcgga |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||| || |||| ||||||| ||| |
|
|
| T |
29197783 |
tgaacatgccattgcatgcaaggtcaatcacatttgaggtgcaatgcaagaagttcaaaagtgttcgccctattggggtgacacgaatcgccgttttgga |
29197882 |
T |
|
| Q |
230 |
tattctaaacggggctga |
247 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
29197883 |
tattctaaacggggctga |
29197900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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