View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0846_low_21 (Length: 587)
Name: NF0846_low_21
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_low_21 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 196 - 547
Target Start/End: Original strand, 42824587 - 42824928
Alignment:
| Q |
196 |
gaaagagaaattatgaagnnnnnnntattgacgaaaaaagaacatttaattctaataattttactagtgtgagatgctggccactacgtcacttttacaa |
295 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
42824587 |
gaaagagaaattatgaagaaaaaaatattgacgaaaaaagaacattcaattctaataattttactagtgta-------ggccactacgtcactttgacaa |
42824679 |
T |
|
| Q |
296 |
aagnnnnnnntacagtacctaccgttactaatatatgatgtaaaactacaaataatgcttataaaaagtgacagggagtaccaattatcagttatgagat |
395 |
Q |
| |
|
||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42824680 |
aagaaaaaaatacaatacctaccgttactaatatatg---taaaactacaaataatgcttataaaaagtgacagggagtaccaattatcagttatgagat |
42824776 |
T |
|
| Q |
396 |
cattctctattttttcattaaactaaaacataacaaatttcatacattgaacatagtcctagacatacaacacttcattcaaatatcaacnnnnnnncaa |
495 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
42824777 |
cattctctattttatcattaaactaaaacataacaaatttcatacattgaacatagtcctagacatacaacacttcattcaaatatcaataaaaaaacaa |
42824876 |
T |
|
| Q |
496 |
tcatattgatgttatcatgataaagtgaaaactacttgtgtcaccacatatt |
547 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42824877 |
tcatattgatgttatcatgataaagtgaaaactacttgtgtcaccacatatt |
42824928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 140; Significance: 5e-73; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 29 - 168
Target Start/End: Complemental strand, 41668224 - 41668085
Alignment:
| Q |
29 |
ggcacaatgttgggcaagatttgggttgaaggttactactcataacagaaaagtcgtagtagttgaacaattcatgtagccgtgtgtatcataaatggaa |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41668224 |
ggcacaatgttgggcaagatttgggttgaaggttactactcataacagaaaagtcgtagtagttgaacaattcatgtagccgtgtgtatcataaatggaa |
41668125 |
T |
|
| Q |
129 |
aaaatgtttttttctgtgatcctggaatcaaataatttcg |
168 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41668124 |
aaaatgtttttttctgtgatcctggaatcaaataatttcg |
41668085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 191 times since January 2019
Visitors: 6046