View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0846_low_210 (Length: 251)
Name: NF0846_low_210
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_low_210 |
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| [»] scaffold0249 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 22983825 - 22984068
Alignment:
| Q |
1 |
caatacataatatctattagtggaatcattatcatgtgtctttaagacacatgttaaattgagtaacttcgaaaacctgaatggtttgggaatgctagga |
100 |
Q |
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| T |
22983825 |
caatacataatatctattagtggaatccttatcatctgtctttaggacacatgttaaattgagtaacttcgaaaacctgaatggtttgggaatgctagga |
22983924 |
T |
|
| Q |
101 |
attagatgtggatgccttgagtccaatggcaaagtgttaatatagaacatgtcttgccattctagcttttgttcatcagatacaacaaacaactgaccaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
22983925 |
attagatgtggatgccttgagtccaatggcaaagtgttaatatagaacatgtcttgccattctaacttttgttcatcagatacaacaaacaactgaccaa |
22984024 |
T |
|
| Q |
201 |
atccttgcatatcatttggtgtttgccaatatttcttcatctca |
244 |
Q |
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| T |
22984025 |
atccttgcatatcatttggtgtttgccaatatttcttcttctca |
22984068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 75 - 238
Target Start/End: Complemental strand, 22932835 - 22932672
Alignment:
| Q |
75 |
acctgaatggtttgggaatgctaggaattagatgtggatgccttgagtccaatggcaaagtgttaatatagaacatgtcttgccattctagcttttgttc |
174 |
Q |
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| T |
22932835 |
acctgaatggtgtgggaatactaggaattagatgttgatgccttgagtccaatggtaaagtgttaatgtagaacatgtctgcccattctagcttttgttc |
22932736 |
T |
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| Q |
175 |
atcagatacaacaaacaactgaccaaatccttgcatatcatttggtgtttgccaatatttcttc |
238 |
Q |
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| T |
22932735 |
ctcagatacaacaaacaactgaccaaatccttgtatatcatttggtgtttgccaaaatttcttc |
22932672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 71 - 243
Target Start/End: Complemental strand, 21350629 - 21350457
Alignment:
| Q |
71 |
gaaaacctgaatggtttgggaatgctaggaattagatgtggatgccttgagtccaatggcaaagtgttaatatagaacatgtcttgccattctagctttt |
170 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||| ||| || ||||||||||| |||||||||||| |||||| ||||||| |
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| T |
21350629 |
gaaaacctgaatggtttgggaatattaggaattagatgtggatgccttgcatccggagggaaagtgttaatgtagaacatgtctgcccattcgagctttt |
21350530 |
T |
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| Q |
171 |
gttcatcagatacaacaaacaactgaccaaatccttgcatatcatttggtgtttgccaatatttcttcatctc |
243 |
Q |
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| T |
21350529 |
gttcatcagatacaacaaacaactgaccaaacccctgcacatcatttggtgtttgccaaaatttcttcttctc |
21350457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 157 - 243
Target Start/End: Complemental strand, 21249177 - 21249091
Alignment:
| Q |
157 |
ccattctagcttttgttcatcagatacaacaaacaactgaccaaatccttgcatatcatttggtgtttgccaatatttcttcatctc |
243 |
Q |
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| T |
21249177 |
ccattctaatttttgatcatcagagacaacaaacatctgaccaaatccttccatatcatttggagtttgccaaaatttcttcttctc |
21249091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 238
Target Start/End: Complemental strand, 21263310 - 21263229
Alignment:
| Q |
157 |
ccattctagcttttgttcatcagatacaacaaacaactgaccaaatccttgcatatcatttggtgtttgccaatatttcttc |
238 |
Q |
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|||||||| |||||| | |||||||||||||||| || |||||||| | ||||||| ||||||||||||| |||||||| |
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| T |
21263310 |
ccattctaacttttgattctcagatacaacaaacagttggccaaatccctcaatatcatctggtgtttgccaaaatttcttc |
21263229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0249 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: scaffold0249
Description:
Target: scaffold0249; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 101 - 234
Target Start/End: Original strand, 24624 - 24757
Alignment:
| Q |
101 |
attagatgtggatgccttgagtccaatggcaaagtgttaatatagaacatgtcttgccattctagcttttgttcatcagatacaacaaacaactgaccaa |
200 |
Q |
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||||||||| ||||||||||||| |||| |||||||||||| |||||||||||| | |||||||||||||||||| |||||||||||| | |||||||| |
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| T |
24624 |
attagatgttgatgccttgagtctaatgacaaagtgttaatgtagaacatgtctgcctattctagcttttgttcataagatacaacaaatatctgaccaa |
24723 |
T |
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| Q |
201 |
atccttgcatatcatttggtgtttgccaatattt |
234 |
Q |
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||||||| |||||||||| |||||||||| |||| |
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| T |
24724 |
atccttgtatatcatttgatgtttgccaaaattt |
24757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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