View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0846_low_212 (Length: 251)
Name: NF0846_low_212
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_low_212 |
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| [»] chr2 (2 HSPs) |
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| [»] chr6 (4 HSPs) |
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| [»] scaffold0531 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 30 - 251
Target Start/End: Original strand, 43854503 - 43854724
Alignment:
| Q |
30 |
ccttccacaccagagaaaccatccaagggtccaatgtggagaggagttttattagcatatattgtcgtagctttgtgttatttccctgttgctcttattg |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
43854503 |
ccttccacaccagagaaaccatccaagggtccaatgtggagaggagttttattagcatatattgttgtagctttgtgttatttccctgttgctcttattg |
43854602 |
T |
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| Q |
130 |
gatattggatgtttggcaattcagttgctgataatattcttacttctcttaataaacctacttggcttatagttgcagctaacatgtttgttgtcatcca |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43854603 |
gatattggatgtttggcaattcagttgctgataatattcttacttctcttaataaacctacttggcttatagttgcagctaacatgtttgttgtcatcca |
43854702 |
T |
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| Q |
230 |
tgttataggaagctatcaggta |
251 |
Q |
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|||||||||||||||||||||| |
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| T |
43854703 |
tgttataggaagctatcaggta |
43854724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 149
Target Start/End: Complemental strand, 41381699 - 41381586
Alignment:
| Q |
36 |
acaccagagaaaccatccaagggtccaatgtggagaggagttttattagcatatattgtcgtagctttgtgttatttccctgttgctcttattggatatt |
135 |
Q |
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||||| ||||||||||| |||||||||||||||| ||||||| | || || || || || || |||||||| || || ||||||||| |||| || |||| |
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| T |
41381699 |
acacctgagaaaccatctaagggtccaatgtggaaaggagttatctttgcctacatggttgttgctttgtgctactttcctgttgctattatcggttatt |
41381600 |
T |
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| Q |
136 |
ggatgtttggcaat |
149 |
Q |
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| T |
41381599 |
atgtgtttggcaat |
41381586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 36 - 251
Target Start/End: Complemental strand, 7978195 - 7977980
Alignment:
| Q |
36 |
acaccagagaaaccatccaagggtccaatgtggagaggagttttattagcatatattgtcgtagctttgtgttatttccctgttgctcttattggatatt |
135 |
Q |
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||||| |||||||||||||||| ||||||||||||||||||| | | ||||| ||||| || ||||||||||| |||||||||||||||||||| || | |
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| T |
7978195 |
acaccggagaaaccatccaaggttccaatgtggagaggagttgttgttgcatacattgttgttgctttgtgttacttccctgttgctcttattggttact |
7978096 |
T |
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| Q |
136 |
ggatgtttggcaattcagttgctgataatattcttacttctcttaataaacctacttggcttatagttgcagctaacatgtttgttgtcatccatgttat |
235 |
Q |
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|||| ||||| ||| |||| || | | || || | ||| | | |||||| | |||||||| | ||||||||||||||||||| || ||||| || |
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| T |
7978095 |
ggatatttggaaatgaggttgatggtgacatcctcatatctttacagaaacctgcatggcttattgcaacagctaacatgtttgttgttattcatgtgat |
7977996 |
T |
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| Q |
236 |
aggaagctatcaggta |
251 |
Q |
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||||||||||||||| |
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| T |
7977995 |
tggaagctatcaggta |
7977980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 36 - 149
Target Start/End: Complemental strand, 7971262 - 7971149
Alignment:
| Q |
36 |
acaccagagaaaccatccaagggtccaatgtggagaggagttttattagcatatattgtcgtagctttgtgttatttccctgttgctcttattggatatt |
135 |
Q |
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||||| ||||||||||| |||||||||||||||| ||||||| | | ||||| ||||| || |||||||| || || |||||||||||||| || |||| |
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| T |
7971262 |
acacctgagaaaccatctaagggtccaatgtggaaaggagttattgttgcatacattgttgttgctttgtgctactttcctgttgctcttatcggttatt |
7971163 |
T |
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| Q |
136 |
ggatgtttggcaat |
149 |
Q |
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|||| ||||||||| |
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| T |
7971162 |
ggatatttggcaat |
7971149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 36 - 145
Target Start/End: Original strand, 8032547 - 8032656
Alignment:
| Q |
36 |
acaccagagaaaccatccaagggtccaatgtggagaggagttttattagcatatattgtcgtagctttgtgttatttccctgttgctcttattggatatt |
135 |
Q |
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||||| ||||||||||| |||||||||||||||||||| ||| | | || || ||||| || |||||||| || || ||||||||| ||||||| |||| |
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| T |
8032547 |
acacctgagaaaccatctaagggtccaatgtggagaggtgttgttgttgcctacattgttgttgctttgtgctactttcctgttgctattattggttatt |
8032646 |
T |
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| Q |
136 |
ggatgtttgg |
145 |
Q |
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|| ||||||| |
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| T |
8032647 |
gggtgtttgg |
8032656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 36 - 149
Target Start/End: Original strand, 8042451 - 8042564
Alignment:
| Q |
36 |
acaccagagaaaccatccaagggtccaatgtggagaggagttttattagcatatattgtcgtagctttgtgttatttccctgttgctcttattggatatt |
135 |
Q |
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||||| ||||||||||| |||||||||||||||| ||||||| | | || || ||| | || |||||||| || |||||||||||| |||| || |||| |
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| T |
8042451 |
acaccggagaaaccatctaagggtccaatgtggaaaggagttgttgttgcctacattattgttgctttgtgctacttccctgttgctattatcggttatt |
8042550 |
T |
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| Q |
136 |
ggatgtttggcaat |
149 |
Q |
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| T |
8042551 |
ggatatttggcaat |
8042564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 36 - 145
Target Start/End: Complemental strand, 14198146 - 14198037
Alignment:
| Q |
36 |
acaccagagaaaccatccaagggtccaatgtggagaggagttttattagcatatattgtcgtagctttgtgttatttccctgttgctcttattggatatt |
135 |
Q |
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||||| || |||||||| ||||||||||||||||||||||| | |||| ||||| || ||||||||||| || || || |||||||| ||||| |||| |
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| T |
14198146 |
acaccggaaaaaccatctaagggtccaatgtggagaggagtgattgtagcctatatagttgtagctttgtgctactttccagttgctctcattggttatt |
14198047 |
T |
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| Q |
136 |
ggatgtttgg |
145 |
Q |
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|||||||||| |
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| T |
14198046 |
ggatgtttgg |
14198037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 210 - 251
Target Start/End: Complemental strand, 14197972 - 14197931
Alignment:
| Q |
210 |
aacatgtttgttgtcatccatgttataggaagctatcaggta |
251 |
Q |
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|||||||||||||| ||||||||||| |||||||| |||||| |
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| T |
14197972 |
aacatgtttgttgttatccatgttattggaagctaccaggta |
14197931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0531 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0531
Description:
Target: scaffold0531; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 36 - 149
Target Start/End: Complemental strand, 2560 - 2447
Alignment:
| Q |
36 |
acaccagagaaaccatccaagggtccaatgtggagaggagttttattagcatatattgtcgtagctttgtgttatttccctgttgctcttattggatatt |
135 |
Q |
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||||| ||||||||||| |||||||||||||||||||| ||| | | || || ||||| || ||| |||| || || ||||||||| | ||||| |||| |
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| T |
2560 |
acacctgagaaaccatctaagggtccaatgtggagaggtgttgttgttgcctacattgttgttgctgtgtgctactttcctgttgctataattggttatt |
2461 |
T |
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| Q |
136 |
ggatgtttggcaat |
149 |
Q |
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|||||||||||||| |
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| T |
2460 |
ggatgtttggcaat |
2447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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