View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0846_low_217 (Length: 239)

Name: NF0846_low_217
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0846_low_217
NF0846_low_217
[»] chr1 (3 HSPs)
chr1 (1-227)||(32253644-32253870)
chr1 (1-227)||(32248858-32249084)
chr1 (1-227)||(32243120-32243346)


Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 32253644 - 32253870
Alignment:
Q  1 ctactctcacgatttggctcctctggtcgcgtggggattgtagtctcttagctgtatcctgatccgtgttgagagcctgcgctaaaaactctgagctgaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32253644 ctactctcacgatttggctcctctggtcgcgtggggattgtagtctcttagctgtatcctgatccgtgttgagagcctgcgctaaaaactctgagctgaa 32253743  T
Q  101 accactcagcacgctgctaccttcattttgttcctcagatccctcctcttgttggtggtgtcctcctctacgtccggggaaactgggcctttgttgatgt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  32253744 accactcagcacgctgctaccttcattttgttcctcagatccctcctcttgttggtggcgtcctcctctacgtccggggaaactgggcctttgttgatgt 32253843  T
Q  201 cgtccttgttgtctctcttgagtttca 227  Q
    |||||||||||||||||||||||||||    
T  32253844 cgtccttgttgtctctcttgagtttca 32253870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 32248858 - 32249084
Alignment:
Q  1 ctactctcacgatttggctcctctggtcgcgtggggattgtagtctcttagctgtatcctgatccgtgttgagagcctgcgctaaaaactctgagctgaa 100  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  32248858 ctactctcacgatttggctcctctggtcgcgtggagattgaagtctcttagctgtatcctgatccgtgttgagtgcctgcgctaaaaactctgagctgaa 32248957  T
Q  101 accactcagcacgctgctaccttcattttgttcctcagatccctcctcttgttggtggtgtcctcctctacgtccggggaaactgggcctttgttgatgt 200  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||| |||    
T  32248958 accactcagcacactgctaccttcgttttgttcctcagatccctcctcttgttgttggcgtcctcctctacgtccggggaaactgggcctctgttgctgt 32249057  T
Q  201 cgtccttgttgtctctcttgagtttca 227  Q
    ||||||||||||| |||||||||||||    
T  32249058 cgtccttgttgtcgctcttgagtttca 32249084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 32243120 - 32243346
Alignment:
Q  1 ctactctcacgatttggctcctctggtcgcgtggggattgtagtctcttagctgtatcctgatccgtgttgagagcctgcgctaaaaactctgagctgaa 100  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  32243120 ctactctcacgatttggctcctctggtcgcgtggagattgaagtctcttagctgtatcctgatccgtgttgagtgcctgcgctaaaaactctgagctgaa 32243219  T
Q  101 accactcagcacgctgctaccttcattttgttcctcagatccctcctcttgttggtggtgtcctcctctacgtccggggaaactgggcctttgttgatgt 200  Q
    |||||||||||| ||||||||||| ||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||| ||||| |||    
T  32243220 accactcagcacactgctaccttcgttttgttcctcagatcccttctcttgttgttggcgtcctcctctacgtccggggaaactgggcctctgttgctgt 32243319  T
Q  201 cgtccttgttgtctctcttgagtttca 227  Q
    ||||||||||||| |||||||||||||    
T  32243320 cgtccttgttgtcgctcttgagtttca 32243346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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