View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0846_low_22 (Length: 586)
Name: NF0846_low_22
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 137; Significance: 3e-71; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 284 - 428
Target Start/End: Complemental strand, 40675708 - 40675564
Alignment:
| Q |
284 |
gttgctcttggggaaatgtttagaatgctggatctcaagggttcaacccaggcttgattgttctcctggttattggtgggttgctgttgacatttctcat |
383 |
Q |
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| T |
40675708 |
gttgctcttggggaaatgtttagaatgctggatctcaagggttcaacccaggcttgattgttctcctggttattggtgggttgctgttgacatttctcat |
40675609 |
T |
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| Q |
384 |
tggaaattatgcgctctacgtctatgcacagaaggccctccctcc |
428 |
Q |
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| T |
40675608 |
tggaaattacgcgctctacgtttatgcacagaaggccctccctcc |
40675564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 284 - 429
Target Start/End: Complemental strand, 40662152 - 40662007
Alignment:
| Q |
284 |
gttgctcttggggaaatgtttagaatgctggatctcaagggttcaacccaggcttgattgttctcctggttattggtgggttgctgttgacatttctcat |
383 |
Q |
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| T |
40662152 |
gttgctcttggggaaatgtttagaatgctggatctcaagggttcaacccagacttgattgttctcctcgttattggtgggttgctgttgacatttctcat |
40662053 |
T |
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| Q |
384 |
tggaaattatgcgctctacgtctatgcacagaaggccctccctccc |
429 |
Q |
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| T |
40662052 |
tggaaattatgcggtctacgtctatgcacagaaggccctccctccc |
40662007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 469 - 576
Target Start/End: Complemental strand, 40661967 - 40661860
Alignment:
| Q |
469 |
gagaggctgaagcaaggagtctctgcacctggagagtagaggcactgtactcaaatgttctgttgaatgtggattaccttgtactttttcaagaattctg |
568 |
Q |
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| T |
40661967 |
gagaggctgaagcaaggagtctctgcacctggagagtagaggcactgtactcaaatgttctgttgaatgtggattaccttgtactttttcaagaattctg |
40661868 |
T |
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| Q |
569 |
gttctgtg |
576 |
Q |
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| T |
40661867 |
gttctgtg |
40661860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 294 - 428
Target Start/End: Complemental strand, 40656866 - 40656732
Alignment:
| Q |
294 |
gggaaatgtttagaatgctggatctcaagggttcaacccaggcttgattgttctcctggttattggtgggttgctgttgacatttctcattggaaattat |
393 |
Q |
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| T |
40656866 |
gggaaatatttagaaagctggatctcaagggttcaacccaggcttagtagttctcctggttattggtgggctgctgttgacattcctcattggaaattat |
40656767 |
T |
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| Q |
394 |
gcgctctacgtctatgcacagaaggccctccctcc |
428 |
Q |
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| T |
40656766 |
gcgctttatgtttatgcacagaaggccctccctcc |
40656732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 469 - 576
Target Start/End: Complemental strand, 40675523 - 40675416
Alignment:
| Q |
469 |
gagaggctgaagcaaggagtctctgcacctggagagtagaggcactgtactcaaatgttctgttgaatgtggattaccttgtactttttcaagaattctg |
568 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
40675523 |
gagaggctgaagcaaggagtctctgcacctggagagtaaaggcattttactcaaatgttctgttgaatgtggattaccttgtactttttaaagaattctg |
40675424 |
T |
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| Q |
569 |
gttctgtg |
576 |
Q |
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| T |
40675423 |
gttctgtg |
40675416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 97 - 178
Target Start/End: Complemental strand, 40662336 - 40662255
Alignment:
| Q |
97 |
tcttgcacattgtagccattctttatttgctctgcaattcatattactatttgtatacatggatgattgtgagtggtggtta |
178 |
Q |
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| T |
40662336 |
tcttgcacattgtagccattctttatttgctctgcaattcatattactatttgtatacatggatgattgtgagtggtggtta |
40662255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 98 - 178
Target Start/End: Complemental strand, 40675877 - 40675797
Alignment:
| Q |
98 |
cttgcacattgtagccattctttatttgctctgcaattcatattactatttgtatacatggatgattgtgagtggtggtta |
178 |
Q |
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| T |
40675877 |
cttgcacattgcagccattctttatctgctctgcaattcatattactatttgtatacatggatgattgtgagtggtggtta |
40675797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 469 - 557
Target Start/End: Complemental strand, 40656691 - 40656603
Alignment:
| Q |
469 |
gagaggctgaagcaaggagtctctgcacctggagagtagaggcactgtactcaaatgttctgttgaatgtggattaccttgtacttttt |
557 |
Q |
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| T |
40656691 |
gagagactgaagcaaggagtctctgcacctggagagtaggggcaatgtactcaaatgttctacggaatgtggattaccttgtacttttt |
40656603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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