View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0846_low_221 (Length: 230)
Name: NF0846_low_221
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_low_221 |
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| [»] scaffold0204 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 24 - 139
Target Start/End: Original strand, 46141836 - 46141951
Alignment:
| Q |
24 |
aacctttaccacctccaaaatttaggctttgtttggattggtagtattggatagaatggaatggtatgtgatggaatgacattatattccattgtttgga |
123 |
Q |
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| T |
46141836 |
aacctttaccacctccaaaatttagcctttgtttggattggtagtattggatagaatggaatggtatgtgatggaatgacattatattccattgtttgga |
46141935 |
T |
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| Q |
124 |
tattaaacaaaagaat |
139 |
Q |
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| T |
46141936 |
tattaaacaaaagaat |
46141951 |
T |
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Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 45 - 139
Target Start/End: Original strand, 13105764 - 13105858
Alignment:
| Q |
45 |
ttaggctttgtttggattggtagtattggatagaatggaatggtatgtgatggaatgacattatattccattgtttggatattaaacaaaagaat |
139 |
Q |
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| T |
13105764 |
ttaggctttgtttggattagtaatattgcatggaatggaatgatatgtgatggaatgacattatattccattgtttggatattaaacaaaagaat |
13105858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 47 - 127
Target Start/End: Original strand, 51194046 - 51194126
Alignment:
| Q |
47 |
aggctttgtttggattggtagtattggatagaatggaatggtatgtgatggaatgacattatattccattgtttggatatt |
127 |
Q |
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| T |
51194046 |
aggctttgtttggatcggtggtattggatggaatggagtgctatgtgatggaatgacattatgttccattgtttggatatt |
51194126 |
T |
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Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 134 - 215
Target Start/End: Complemental strand, 17718702 - 17718621
Alignment:
| Q |
134 |
aagaataagaaataggacgtaaaggattgcttagaaaacagatgtaagatactatagaatgcaagaaacagcaatcaagagg |
215 |
Q |
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| T |
17718702 |
aagaataagaaataggacgtaatgggttgcttagaaaacatatttaagatgctatggaattcaagaatcaaccatcaagagg |
17718621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 47 - 130
Target Start/End: Original strand, 8851061 - 8851144
Alignment:
| Q |
47 |
aggctttgtttggattggtagtattggatagaatggaatggtatgtgatggaatgacattatattccattgtttggatattaaa |
130 |
Q |
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| T |
8851061 |
aggctctgtttggattagtggtttgagatggaatggaatggaatgtgatggaatgaaatgatattccattgtttggattttaaa |
8851144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 139
Target Start/End: Complemental strand, 22473799 - 22473756
Alignment:
| Q |
98 |
aatgacattatat--tccattgtttggatattaaacaaaagaat |
139 |
Q |
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| T |
22473799 |
aatgacattatatgttccattgtttggatattaaacaaaagaat |
22473756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0204 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0204
Description:
Target: scaffold0204; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 139
Target Start/End: Complemental strand, 12519 - 12473
Alignment:
| Q |
93 |
gatggaatgacattatattccattgtttggatattaaacaaaagaat |
139 |
Q |
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| T |
12519 |
gatggaatgacattatgttcctttgtttggatatttaaaaaaagaat |
12473 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 124
Target Start/End: Complemental strand, 20029829 - 20029749
Alignment:
| Q |
44 |
tttaggctttgtttggattggtagtattggatagaatggaatggtatgtgatggaatgacattatattccattgtttggat |
124 |
Q |
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| T |
20029829 |
tttaggctctgtttggattagtggtttgggatggaatggaatgggatgggatcgaatgggatgatatttcattgtttggat |
20029749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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