View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0846_low_225 (Length: 224)
Name: NF0846_low_225
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_low_225 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 29462498 - 29462268
Alignment:
| Q |
1 |
aaccttcaaatgtacaattttcatctaagtaactatttagcaattacaactccatctacatgtatgcaaaacaaaacattattttctacaacagtgacac |
100 |
Q |
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| T |
29462498 |
aaccttcaaatgtacaattttcatttaagtgactatttagcaattacaactccatctacatgtatgcaaaacaaaacattattttctacaacagtaacac |
29462399 |
T |
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| Q |
101 |
ttatcatgccatctctggcggttctacatacattggcttaaattagtgtggaattaac-------atgcaaaccgtgaacaatatcgtggccaaaggact |
193 |
Q |
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| T |
29462398 |
ttatcatgccatctctagcagttctacatacataggcttaaattagtgtgaaattaacatgaataatgcaaaccgtgaacaatatcgtgaccaaaggact |
29462299 |
T |
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| Q |
194 |
aacaaagaattgtgcatgagactaaaatcaa |
224 |
Q |
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| T |
29462298 |
aacaaagaattgtgcattagaataaaatcaa |
29462268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 101 - 224
Target Start/End: Complemental strand, 29470172 - 29470049
Alignment:
| Q |
101 |
ttatcatgccatctctggcggttctacatacattggcttaaattagtgtggaattaacatgcaaaccgtgaacaatatcgtggccaaaggactaacaaag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| | |
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| T |
29470172 |
ttatcatgccatctctggcggttctacatacattggcttcaattagtgtgaaattaacatacaaaccgtgaacaatatcgtggccaaaggactaacaatg |
29470073 |
T |
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| Q |
201 |
aattgtgcatgagactaaaatcaa |
224 |
Q |
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| T |
29470072 |
aattgtgcattagactaaaatcaa |
29470049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 29479001 - 29478900
Alignment:
| Q |
1 |
aaccttcaaatgtacaattttcatctaagtaactatttagcaattacaactccatctacatgtatgcaaaacaaaacattattttctacaacagtgacac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29479001 |
aaccttcaaatgtacaattttcatctaagtaactatttagcaattacaactccatctacatgtatgcaaaacaaaacattattttctacaacagtgacac |
29478902 |
T |
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| Q |
101 |
tt |
102 |
Q |
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|| |
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| T |
29478901 |
tt |
29478900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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