View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0846_low_227 (Length: 216)
Name: NF0846_low_227
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_low_227 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 32253644 - 32253838
Alignment:
| Q |
1 |
ctactctcacgatttggctcctctggtcgcgtggggattgtagtctcttagctgtatcctgatccgtgttgagagcctgcgctaaaaactctgagctgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32253644 |
ctactctcacgatttggctcctctggtcgcgtggggattgtagtctcttagctgtatcctgatccgtgttgagagcctgcgctaaaaactctgagctgaa |
32253743 |
T |
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| Q |
101 |
accactcagcacgctgctaccttcattttgttcctcagatccctcctcttgttggtggtgtcctcctctacgtccggggaaactgggcctttgtt |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
32253744 |
accactcagcacgctgctaccttcattttgttcctcagatccctcctcttgttggtggcgtcctcctctacgtccggggaaactgggcctttgtt |
32253838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 32248858 - 32249052
Alignment:
| Q |
1 |
ctactctcacgatttggctcctctggtcgcgtggggattgtagtctcttagctgtatcctgatccgtgttgagagcctgcgctaaaaactctgagctgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
32248858 |
ctactctcacgatttggctcctctggtcgcgtggagattgaagtctcttagctgtatcctgatccgtgttgagtgcctgcgctaaaaactctgagctgaa |
32248957 |
T |
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| Q |
101 |
accactcagcacgctgctaccttcattttgttcctcagatccctcctcttgttggtggtgtcctcctctacgtccggggaaactgggcctttgtt |
195 |
Q |
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|||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||| |
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| T |
32248958 |
accactcagcacactgctaccttcgttttgttcctcagatccctcctcttgttgttggcgtcctcctctacgtccggggaaactgggcctctgtt |
32249052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 32243120 - 32243314
Alignment:
| Q |
1 |
ctactctcacgatttggctcctctggtcgcgtggggattgtagtctcttagctgtatcctgatccgtgttgagagcctgcgctaaaaactctgagctgaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
32243120 |
ctactctcacgatttggctcctctggtcgcgtggagattgaagtctcttagctgtatcctgatccgtgttgagtgcctgcgctaaaaactctgagctgaa |
32243219 |
T |
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| Q |
101 |
accactcagcacgctgctaccttcattttgttcctcagatccctcctcttgttggtggtgtcctcctctacgtccggggaaactgggcctttgtt |
195 |
Q |
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|||||||||||| ||||||||||| ||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||| |||| |
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| T |
32243220 |
accactcagcacactgctaccttcgttttgttcctcagatcccttctcttgttgttggcgtcctcctctacgtccggggaaactgggcctctgtt |
32243314 |
T |
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