View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0846_low_230 (Length: 211)
Name: NF0846_low_230
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_low_230 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 32253644 - 32253833
Alignment:
| Q |
1 |
ctactctcacgatttggctcctctggtcgcgtggggattgtagtctcttagctgtatcctgatccgtgttgagagcctgcgctaaaaactctgagctgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32253644 |
ctactctcacgatttggctcctctggtcgcgtggggattgtagtctcttagctgtatcctgatccgtgttgagagcctgcgctaaaaactctgagctgaa |
32253743 |
T |
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| Q |
101 |
accactcagcacgctgctaccttcattttgttcctcagatccctcctcttgttggtggtgtcctcctctacgtccggggaaactgggcct |
190 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
32253744 |
accactcagcacgctgctaccttcattttgttcctcagatccctcctcttgttggtggcgtcctcctctacgtccggggaaactgggcct |
32253833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 32248858 - 32249047
Alignment:
| Q |
1 |
ctactctcacgatttggctcctctggtcgcgtggggattgtagtctcttagctgtatcctgatccgtgttgagagcctgcgctaaaaactctgagctgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
32248858 |
ctactctcacgatttggctcctctggtcgcgtggagattgaagtctcttagctgtatcctgatccgtgttgagtgcctgcgctaaaaactctgagctgaa |
32248957 |
T |
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| Q |
101 |
accactcagcacgctgctaccttcattttgttcctcagatccctcctcttgttggtggtgtcctcctctacgtccggggaaactgggcct |
190 |
Q |
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|||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
32248958 |
accactcagcacactgctaccttcgttttgttcctcagatccctcctcttgttgttggcgtcctcctctacgtccggggaaactgggcct |
32249047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 32243120 - 32243309
Alignment:
| Q |
1 |
ctactctcacgatttggctcctctggtcgcgtggggattgtagtctcttagctgtatcctgatccgtgttgagagcctgcgctaaaaactctgagctgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
32243120 |
ctactctcacgatttggctcctctggtcgcgtggagattgaagtctcttagctgtatcctgatccgtgttgagtgcctgcgctaaaaactctgagctgaa |
32243219 |
T |
|
| Q |
101 |
accactcagcacgctgctaccttcattttgttcctcagatccctcctcttgttggtggtgtcctcctctacgtccggggaaactgggcct |
190 |
Q |
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|||||||||||| ||||||||||| ||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
32243220 |
accactcagcacactgctaccttcgttttgttcctcagatcccttctcttgttgttggcgtcctcctctacgtccggggaaactgggcct |
32243309 |
T |
|
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