View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0846_low_232 (Length: 208)
Name: NF0846_low_232
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_low_232 |
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Alignment Details
Target: chr6 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 13 - 186
Target Start/End: Complemental strand, 13309827 - 13309645
Alignment:
| Q |
13 |
aatatcaacagtataagtattataatatattacagccatccaatatttgagtagaagatgaaataaattccactggctttaaaagcacaggctgcttgca |
112 |
Q |
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| T |
13309827 |
aatatcaacagtataagtattataatatattacagtcatccaatatttgagtaaaagatgaaataaattccactggctttaaaagcacaggctgcctgca |
13309728 |
T |
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| Q |
113 |
attgccgatgctacaa----------catggaaaatcatgttgtagttgatgctgcacaacaaatgaatggaatataactgttt |
186 |
Q |
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| T |
13309727 |
attgccgatgctacaacatgttgaatcatggagaatgatgttgtagttgatgttgcacaacaaaggaat-gaatataactgttt |
13309645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 15 - 185
Target Start/End: Original strand, 14591742 - 14591921
Alignment:
| Q |
15 |
tatcaacagtataagtattataatatattacagccatccaatatttgagtagaagatgaaataaattccactggctttaaaagcacaggctgcttgcaat |
114 |
Q |
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|||||||| |||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
14591742 |
tatcaacattataagtattataatatattacagtcatccaatatttgagtaaaatatgaaataaattccactggctttaaaagcacagactgcttgcaat |
14591841 |
T |
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| Q |
115 |
tgccgatgctacaa----------catggaaaatcatgttgtagttgatgctgcacaacaaatgaatggaatataactgtt |
185 |
Q |
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| T |
14591842 |
tgttgatgctacaacatggcgaatcatggagaataatgttgtagttgatgctgcacaacaaa-gaaatgaatataactgtt |
14591921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 111; Significance: 3e-56; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 15 - 186
Target Start/End: Complemental strand, 13936212 - 13936032
Alignment:
| Q |
15 |
tatcaacagtataagtattataatatattacagccatccaatatttgagtagaagatgaaataaattccactggctttaaaagcacaggctgcttgcaat |
114 |
Q |
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||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
13936212 |
tatcaacagcataagtattataatatattacagtcatccaatatttgagtaaaagatgaaataaattccactagctttaaaagcacaggctgcttgcaat |
13936113 |
T |
|
| Q |
115 |
tgccgatgctacaac----------atggaaaatcatgttgtagttgatgctgcacaacaaatgaatggaatataactgttt |
186 |
Q |
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| T |
13936112 |
tgccgatgctacaacatggcgaatcatggagaatgatgttgtagttgatgctgcacaacaaaggaat-gaatataactgttt |
13936032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 7e-45; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 15 - 172
Target Start/End: Original strand, 49281633 - 49281802
Alignment:
| Q |
15 |
tatcaacagtataagtattataatatattacagccatccaatat--ttgagtagaagatgaaataaattccactggctttaaaagcacaggctgcttgca |
112 |
Q |
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|||||||| |||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
49281633 |
tatcaacaatataagtattataatatattacagtcatccaatatatttgagtaaaagatgaaataaattccactggctttaaaagcacaggctgcttaca |
49281732 |
T |
|
| Q |
113 |
attgccgatgctacaa----------catggaaaatcatgttgtagttgatgctgcacaacaaatgaatg |
172 |
Q |
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||||| |||||||||| |||||| ||| ||||||||||||||||||||||||||| ||||| |
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| T |
49281733 |
attgctgatgctacaacatggcgaatcatggagaatgatgttgtagttgatgctgcacaacaaaggaatg |
49281802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 13787361 - 13787310
Alignment:
| Q |
13 |
aatatcaacagtataagtattataatatattacagccatccaatatttgagta |
65 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
13787361 |
aatatcaacagtataagtattataatatattacag-catccaatatttgagta |
13787310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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