View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0846_low_3 (Length: 771)

Name: NF0846_low_3
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0846_low_3
NF0846_low_3
[»] chr2 (1 HSPs)
chr2 (18-674)||(4676502-4677158)


Alignment Details
Target: chr2 (Bit Score: 603; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 603; E-Value: 0
Query Start/End: Original strand, 18 - 674
Target Start/End: Original strand, 4676502 - 4677158
Alignment:
Q  18 aggagcagagaccaaaagaaactgaagatcattaacccattccaatgtttgaatcgttcctctccaagcaatcacaatatcccttctccccaacacatct 117  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4676502 aggagcagaaaccaaaagaaactgaagatcattaacccattccaatgtttgaatcgttcctctccaagcaatcacaatatcccttctccccaacacatct 4676601  T
Q  118 ttcccttcatcattagccacagcaacaaatccaatccaatttgattccttactccaagcttctctagataaagactttataataaacgcttccggaacat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4676602 ttcccttcatcattagccacagcaacaaatccaatccaatttgattccttactccaagcttctctagataaagactttataataaacgcttccggaacat 4676701  T
Q  218 tgatttcggaagtcgcataaataaattttgtcacagaatatttaaaaggatttccattttctnnnnnnnctttagaaaagaaatcattctttgcatacct 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||    
T  4676702 tgatttcggaagtcgcataaataaattttgtcacagaatatttaaaaggatttccattttctaaaaaaactttagaaaagaaatcattctttgcatacct 4676801  T
Q  318 acaactacctgcaaactttgatgctttctctgtgttgaaagcatcgtatgttgcttgtgccatttcaccatagtggattatgtaacgtcgtagatcaatg 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4676802 acaactacctgcaaactttgatgctttctctgtgttgaaagcatcgtatgttgcttgtgccatttcaccatagtggattatgtaacgtcgtagatcaatg 4676901  T
Q  418 tcaagagggtctaatagacctatccaatgattttcaccactgagttgttgccatttgtttgctatgttgctgctgttgtttggtttcttcttcttcaaat 517  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  4676902 tcaagagggtctaatagacctatccaatgattttcaccactgagttgttgccatttgtttgctatgctgctgctgttgtttggtttcttcttcttcaaat 4677001  T
Q  518 tgtttctccatcttttgatcatgattgctactctgcttggnnnnnnnatgtatggaaccagagaggccttcaccttcatatatactacgtacaaaaataa 617  Q
    ||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4677002 tgtttctccatcttttgatcatgattgctactctgcttggtttttttatgtatggaaccagagaggccttcaccttcatatatactacgtacaaaaataa 4677101  T
Q  618 tttgtatttgactttcgaaggataggacaattattggctcaatttaatgtttgaggt 674  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  4677102 tttgtatttgactttcgaaggataggacaattatgggctcaatttaatgtttgaggt 4677158  T

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