View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0846_low_31 (Length: 578)
Name: NF0846_low_31
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_low_31 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 79 - 578
Target Start/End: Original strand, 3900129 - 3900619
Alignment:
| Q |
79 |
gttggttcgagtttcaaatctaggattacaagtgaaattatctcgcttatccttcttacgtacacctgccttgcaacatactactacaaatctacaggta |
178 |
Q |
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| T |
3900129 |
gttggttcgagtttcaagtctagggttacaagtgaaattatctcgcttatccttcttac-----ccttccttgcaaca---tactacaaatctacaggta |
3900220 |
T |
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| Q |
179 |
gttatgtctccaannnnnnngcaattttgatgcctttattttctaacaccaaatccattttcaacaccaaaatatacctaatcggtgcttctaaacaatc |
278 |
Q |
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| T |
3900221 |
gttatgtctccaatttttttgcacttttgatgcctttattttctaacaccaaatccattttcaacaccaaaatatacctaatcggtgcttctaaacaatc |
3900320 |
T |
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| Q |
279 |
taaaaattgttttctctacaattcatagaattcattcaggtgaagccataaccttctactttcttggtagttggattacggtgatgcaaccattttagtt |
378 |
Q |
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| T |
3900321 |
taaaaattgttttctctacaattcatagaattcattcaggtgaagccataaccttctactttcttggtagttggattacggtgatgcaaccattttagtt |
3900420 |
T |
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| Q |
379 |
gattgtggaaggcagtgaagtannnnnnnnnnnnaactacaatatattgtaaaaggaattaatcccaacaggtccaactcaacaaaataacatagagaca |
478 |
Q |
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|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || || |
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| T |
3900421 |
gattgtggaaggaagtgaagtatttttgttttttaactacaatatattgtaaaaggaattaatcccaacaggtccaactcaacaaaataaca-aaagtca |
3900519 |
T |
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| Q |
479 |
aaacaggctcagttaatttgggatggaaagaatactatatttgatatgagatattgactcgtataaatcagaaaaggtcaaacatgctctaagtgaggaa |
578 |
Q |
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| T |
3900520 |
agaatggctcagttaatttgggatggaaagagtactatatttgatatgagatattgactcatataaatcagaaaaggtcaaacattctctaagtgaggaa |
3900619 |
T |
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