View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0846_low_34 (Length: 577)
Name: NF0846_low_34
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 2e-96; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 371 - 549
Target Start/End: Complemental strand, 45716268 - 45716090
Alignment:
| Q |
371 |
ttttccacctttcttacgccattaacgaccaaaacccagaaaaactttccctcctttctttcaaagggtcacttcaaaattcacactttctttcttcatg |
470 |
Q |
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| T |
45716268 |
ttttccacctttcttacgccattaacgaccaaaacccagaaaaactttccctcctttctttcaaagggtcacttcaaaattcacactttctttcttcatg |
45716169 |
T |
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| Q |
471 |
gcacaatactacttcacactgtaaatgggttggtgtaacgtgtcaactcggtcgagttaccgcactctctcttccttct |
549 |
Q |
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| T |
45716168 |
gcacaatactacttcacactgtaaatgggttggtgtaacgtgtcaactcggtcgagttaccgcactctctcttccttct |
45716090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 16 - 147
Target Start/End: Complemental strand, 45716607 - 45716476
Alignment:
| Q |
16 |
atataaaaatgtgttgggggttttggtgtaagaaagggtttatttgccgttatgaatgttgtaatcacgtgcgatgcgtgctaccttctgacacatcctt |
115 |
Q |
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| T |
45716607 |
atataaaaatgtgttgagggttttggtgtaagaaagggtttatttgccgttatgaatgttgtaatcacgtgcgatgcgtgctaccttctgacacatcctt |
45716508 |
T |
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| Q |
116 |
cttcttttagcattgtactgtatgtaaccatt |
147 |
Q |
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| T |
45716507 |
cttcttttagcattgtactgtatgtaaccatt |
45716476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 250 - 306
Target Start/End: Complemental strand, 45716389 - 45716333
Alignment:
| Q |
250 |
tattttcatcctcaactactctctccaaatccctttaaatcaaacaccaataacacg |
306 |
Q |
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| T |
45716389 |
tattttcatcctcaactactctctccaaatccctttaaatcaaacaccaataacacg |
45716333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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