View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0846_low_40 (Length: 560)
Name: NF0846_low_40
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 131; Significance: 1e-67; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 183 - 405
Target Start/End: Original strand, 9598883 - 9599104
Alignment:
| Q |
183 |
aggaagaagccaatcataattaatcaccttaaactcnnnnnnnnnaaaggatctcatattcatatctttgaacttataatttggttaaccccctatatca |
282 |
Q |
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| T |
9598883 |
aggaagaagccaatcataattaatcaccttaaact-tttttttttaaaggatctcatattcatatctttgaacttataatttggttaaccccctat--ca |
9598979 |
T |
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| Q |
283 |
gggaacataatatattatagtcaacttggtccgttaattcacaattactttac--nnnnnnnnnnnaaggatcataattactagtactttagtgttactc |
380 |
Q |
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| T |
9598980 |
tggaacataatatattatagtcaacttggtccgttaattcacaattactttacttttttttttttgaaggatcataattactagtactttagtgttactc |
9599079 |
T |
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| Q |
381 |
attttataaatacatttgctgttat |
405 |
Q |
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||||||||||||||||||||||||| |
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| T |
9599080 |
attttataaatacatttgctgttat |
9599104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 89 - 203
Target Start/End: Original strand, 9598756 - 9598870
Alignment:
| Q |
89 |
ctttttaacaagcctttcagtaacaacgttgtttagtggtttggttgtaacaaagattttttcctttcaaatccatactaccgaaacctaaattaggaag |
188 |
Q |
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| T |
9598756 |
ctttttaacaagcctttcagtaacaacgttgtttagtggtttggttgtaacaaagattttttcctttcaaatccatactaccaaaacctaaattaggaag |
9598855 |
T |
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| Q |
189 |
aagccaatcataatt |
203 |
Q |
| |
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| T |
9598856 |
aagccaatcataatt |
9598870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 135 - 204
Target Start/End: Complemental strand, 33956884 - 33956815
Alignment:
| Q |
135 |
gtaacaaagattttttcctttcaaatccatactaccgaaacctaaattaggaagaagccaatcataatta |
204 |
Q |
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|||||||||| |||||||||||||||||||| | | ||||||||||||||||||| ||||||||||| |
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| T |
33956884 |
gtaacaaagactttttcctttcaaatccataatgcaaaaacctaaattaggaagaaattaatcataatta |
33956815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 133 - 165
Target Start/End: Complemental strand, 933474 - 933442
Alignment:
| Q |
133 |
ttgtaacaaagattttttcctttcaaatccata |
165 |
Q |
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| T |
933474 |
ttgtaacatagattttttcctttcaaatccata |
933442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 442 - 470
Target Start/End: Original strand, 9599130 - 9599158
Alignment:
| Q |
442 |
aaagaataaaaaattcctatactattatc |
470 |
Q |
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| T |
9599130 |
aaagaataaaaaattcctatactattatc |
9599158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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