View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0846_low_41 (Length: 556)
Name: NF0846_low_41
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_low_41 |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-125; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 42 - 277
Target Start/End: Complemental strand, 7078488 - 7078253
Alignment:
| Q |
42 |
gcatcttcatattggtgtatggaggagcttgtgaaaatagttgagtgtagagaaaaatatggtaggattctaatgccagttttctaccaagtagagccca |
141 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7078488 |
gcatcttcatattggtgtatggaggagcttgtgaaaatagttgagtgtagagaaaaatatggtaggattctaatgccagttttctaccaagtagagccca |
7078389 |
T |
|
| Q |
142 |
cagttgtaaggtaccaaaatgggatttatagagatgcttttgctcaacatgaacaaaattatagttcttacaaggtgctaaggtggagatctgctttgaa |
241 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
7078388 |
cagttgtaaggtaccaaaatgggatttatagagatgcttttgctcaacatgaacaaaattatagttcttacaaggttctaaggtggagatctgctttgaa |
7078289 |
T |
|
| Q |
242 |
gcaatctgctaatatttctggatttgattcatcaca |
277 |
Q |
| |
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||||||||| |||||||||||||||||||||||||| |
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| T |
7078288 |
gcaatctgcaaatatttctggatttgattcatcaca |
7078253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 342 - 537
Target Start/End: Complemental strand, 7078187 - 7077992
Alignment:
| Q |
342 |
gattgaacaaattaaaaaagttaatgtgtctcttcatct-tttttctgcttctccaaagttctacaatatcgaaactaaacaaggatgttgtttgtttga |
440 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7078187 |
gattgaacaaattaaaaaagttaatgtgtctcttcatctctttttctgcttctccaaagttctacaatatcgaaactaaacaaggatgttgtttgtttga |
7078088 |
T |
|
| Q |
441 |
ccgatctaagttgttattaaactaccttattagtgatttatgagagtttatattatggagatctatgtttgtttgaccgatctaaagttctacctat |
537 |
Q |
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| T |
7078087 |
ccgatctaagttgttattaaactaccttattagtgatttatgagagattatattatggagatctaagtttgtttgaccggtct-aagttctacctat |
7077992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 42 - 276
Target Start/End: Original strand, 7028740 - 7028974
Alignment:
| Q |
42 |
gcatcttcatattggtgtatggaggagcttgtgaaaatagttgagtgtagagaaaaatatggtaggattctaatgccagttttctaccaagtagagccca |
141 |
Q |
| |
|
||||||||| |||||||| |||| ||||||||||||||||| ||||| |||| ||| ||||||||| |||||||||||||||||||||||||| | ||| |
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| T |
7028740 |
gcatcttcacattggtgtttggacgagcttgtgaaaatagtcgagtgcagagcaaattatggtagggttctaatgccagttttctaccaagtatatccct |
7028839 |
T |
|
| Q |
142 |
cagttgtaaggtaccaaaatgggatttatagagatgcttttgctcaacatgaacaaaattatagttcttacaaggtgctaaggtggagatctgctttgaa |
241 |
Q |
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||| |||| || | |||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||| |
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| T |
7028840 |
cagatgtacggcatcaaaatgggacttatagagatgcttttgctcaacatgaacaaaagtatagttcctacaaggtgctaagctggagatctgctttgaa |
7028939 |
T |
|
| Q |
242 |
gcaatctgctaatatttctggatttgattcatcac |
276 |
Q |
| |
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||||||||||||||| ||||||||||||||||||| |
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| T |
7028940 |
gcaatctgctaatatgtctggatttgattcatcac |
7028974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 42 - 277
Target Start/End: Original strand, 7035442 - 7035677
Alignment:
| Q |
42 |
gcatcttcatattggtgtatggaggagcttgtgaaaatagttgagtgtagagaaaaatatggtaggattctaatgccagttttctaccaagtagagccca |
141 |
Q |
| |
|
||||||||| |||||||| |||| ||||||||||||||||| ||||| |||| ||| ||||| ||||||||| |||||||||||||||||||||||||| |
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| T |
7035442 |
gcatcttcacattggtgtttggatgagcttgtgaaaatagtcgagtgcagagcaaattatggcaggattctattgccagttttctaccaagtagagccct |
7035541 |
T |
|
| Q |
142 |
cagttgtaaggtaccaaaatgggatttatagagatgcttttgctcaacatgaacaaaattatagttcttacaaggtgctaaggtggagatctgctttgaa |
241 |
Q |
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||| |||| || | |||||||||| ||||||||||||||||||||||||||||||||| |||| || | ||||||||||| ||||||| ||||||||| |
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| T |
7035542 |
cagatgtacggcatcaaaatgggagttatagagatgcttttgctcaacatgaacaaaagtataatttgaataaggtgctaagttggagatatgctttgaa |
7035641 |
T |
|
| Q |
242 |
gcaatctgctaatatttctggatttgattcatcaca |
277 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||| |
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|
| T |
7035642 |
gcaatctgccaatatgtctggatttgattcatcaca |
7035677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 47 - 272
Target Start/End: Original strand, 7021142 - 7021367
Alignment:
| Q |
47 |
ttcatattggtgtatggaggagcttgtgaaaatagttgagtgtagagaaaaatatggtaggattctaatgccagttttctaccaagtagagcccacagtt |
146 |
Q |
| |
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|||| |||||||| |||| |||||||||||||||||||| || |||| |||||||| |||||||||| |||||||||||||||||||||| || |||| |
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| T |
7021142 |
ttcacattggtgtttggatgagcttgtgaaaatagttgattgcagagcaaaatatgataggattctattgccagttttctaccaagtagatcctacagaa |
7021241 |
T |
|
| Q |
147 |
gtaaggtaccaaaatgggatttatagagatgcttttgctcaacatgaacaaaattatagttcttacaaggtgctaaggtggagatctgctttgaagcaat |
246 |
Q |
| |
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||| | | |||| ||| ||||| ||||||||||| ||||| || |||||||| |||||| |||||||| || ||||||| |||||||| ||| |
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| T |
7021242 |
gtacgacatcaaactggtgcttataaagatgcttttgttcaacttggacaaaattttagttccgacaaggtggaaaagtggagacatgctttgacaaaat |
7021341 |
T |
|
| Q |
247 |
ctgctaatatttctggatttgattca |
272 |
Q |
| |
|
|||| ||||||||||||||| ||||| |
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| T |
7021342 |
ctgccaatatttctggatttcattca |
7021367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 199
Target Start/End: Complemental strand, 7069961 - 7069807
Alignment:
| Q |
45 |
tcttcatattggtgtatggaggagcttgtgaaaatagttgagtgtagagaaaaatatggtaggattctaatgccagttttctaccaagtagagcccacag |
144 |
Q |
| |
|
||||||| ||||||| |||| ||||| || ||| | ||||| |||||||| ||| |||| | ||| || |||| ||||||||| |||| || |||||| |
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|
| T |
7069961 |
tcttcatcttggtgtttggatgagctggtcaaagttgttgactgtagagagaaagatggaaacattttattgcctgttttctacaaagttgatcccacaa |
7069862 |
T |
|
| Q |
145 |
ttgtaaggtaccaaaatgggatttatagagatgcttttgctcaacatgaacaaaa |
199 |
Q |
| |
|
|||| ||| | |||||||| | |||| |||||| |||| | ||||||||||||| |
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|
| T |
7069861 |
ttgtgaggcatcaaaatggaacttatgcagatgcatttgttgaacatgaacaaaa |
7069807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 45 - 199
Target Start/End: Complemental strand, 7087027 - 7086873
Alignment:
| Q |
45 |
tcttcatattggtgtatggaggagcttgtgaaaatagttgagtgtagagaaaaatatggtaggattctaatgccagttttctaccaagtagagcccacag |
144 |
Q |
| |
|
|||||| | |||||| |||| |||||||| ||||| |||||||||||||| ||| |||| |||| || |||| ||||| ||| |||| || || |||| |
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|
| T |
7087027 |
tcttcaaaatggtgtttggatgagcttgtcaaaattgttgagtgtagagagaaagatggacagattttattgcctgttttttacaaagttgaccctacag |
7086928 |
T |
|
| Q |
145 |
ttgtaaggtaccaaaatgggatttatagagatgcttttgctcaacatgaacaaaa |
199 |
Q |
| |
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|||| ||| | || || |||| |||| | |||| ||||| ||||||||||||| |
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|
| T |
7086927 |
ttgtgaggcatcagaaggggacttatgcaaatgcatttgcagaacatgaacaaaa |
7086873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 277
Target Start/End: Complemental strand, 7100460 - 7100407
Alignment:
| Q |
224 |
gtggagatctgctttgaagcaatctgctaatatttctggatttgattcatcaca |
277 |
Q |
| |
|
||||||||||||||||||| ||||||| |||| ||||| ||| |||||||||| |
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|
| T |
7100460 |
gtggagatctgctttgaagaaatctgcagatatctctggttttcattcatcaca |
7100407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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