View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0846_low_43 (Length: 545)

Name: NF0846_low_43
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0846_low_43
NF0846_low_43
[»] chr3 (35 HSPs)
chr3 (30-193)||(48178399-48178562)
chr3 (262-361)||(48178930-48179029)
chr3 (274-375)||(40159713-40159814)
chr3 (452-533)||(48179094-48179175)
chr3 (280-361)||(11335195-11335276)
chr3 (280-361)||(41369676-41369757)
chr3 (44-181)||(21031641-21031780)
chr3 (275-361)||(51032514-51032600)
chr3 (280-361)||(31017290-31017370)
chr3 (309-361)||(13724332-13724384)
chr3 (490-533)||(48179478-48179521)
chr3 (490-533)||(48179824-48179867)
chr3 (286-361)||(50745457-50745532)
chr3 (274-379)||(18713682-18713787)
chr3 (490-531)||(48179305-48179346)
chr3 (305-361)||(52678511-52678567)
chr3 (314-361)||(7949885-7949932)
chr3 (490-525)||(48179651-48179686)
chr3 (316-375)||(50025614-50025673)
chr3 (314-361)||(55344223-55344270)
chr3 (305-359)||(12762861-12762915)
chr3 (319-361)||(39172783-39172825)
chr3 (452-482)||(40159879-40159909)
chr3 (315-361)||(43900869-43900915)
chr3 (315-352)||(25542899-25542936)
chr3 (315-352)||(31007280-31007317)
chr3 (304-361)||(39350486-39350543)
chr3 (316-361)||(47988414-47988459)
chr3 (316-361)||(47997701-47997746)
chr3 (316-361)||(48006988-48007033)
chr3 (327-375)||(43460471-43460519)
chr3 (452-480)||(47988526-47988554)
chr3 (452-480)||(47997813-47997841)
chr3 (452-480)||(48007100-48007128)
chr3 (273-361)||(51487843-51487931)
[»] chr5 (12 HSPs)
chr5 (280-361)||(36415955-36416036)
chr5 (280-361)||(21023395-21023476)
chr5 (292-361)||(25038177-25038246)
chr5 (280-361)||(32425049-32425130)
chr5 (275-361)||(285323-285409)
chr5 (280-361)||(15290914-15290995)
chr5 (315-361)||(7077267-7077313)
chr5 (273-361)||(27340966-27341054)
chr5 (317-375)||(1108081-1108139)
chr5 (272-361)||(11306793-11306882)
chr5 (313-361)||(32873075-32873123)
chr5 (317-361)||(41192684-41192728)
[»] chr4 (36 HSPs)
chr4 (280-361)||(39880923-39881004)
chr4 (275-361)||(29406925-29407011)
chr4 (275-365)||(4489687-4489777)
chr4 (275-361)||(30890173-30890259)
chr4 (292-361)||(51540752-51540821)
chr4 (274-361)||(53356964-53357051)
chr4 (292-361)||(1562441-1562510)
chr4 (280-361)||(55996517-55996598)
chr4 (274-361)||(12241155-12241241)
chr4 (271-358)||(17805552-17805639)
chr4 (317-361)||(46363910-46363954)
chr4 (452-490)||(12241050-12241088)
chr4 (275-361)||(43759068-43759154)
chr4 (327-377)||(51296117-51296167)
chr4 (292-361)||(25725599-25725668)
chr4 (317-361)||(42177980-42178024)
chr4 (305-361)||(43358710-43358766)
chr4 (314-361)||(33820264-33820310)
chr4 (303-365)||(35694506-35694571)
chr4 (452-482)||(9472554-9472584)
chr4 (314-352)||(20956509-20956547)
chr4 (315-369)||(22071587-22071641)
chr4 (452-482)||(33820377-33820407)
chr4 (315-361)||(46844169-46844215)
chr4 (315-361)||(56025353-56025399)
chr4 (316-361)||(40756018-40756063)
chr4 (315-359)||(389586-389630)
chr4 (456-488)||(4974105-4974137)
chr4 (454-482)||(25523241-25523269)
chr4 (456-484)||(36110132-36110160)
chr4 (313-361)||(36812329-36812377)
chr4 (275-359)||(42915107-42915191)
chr4 (456-484)||(43511692-43511720)
chr4 (281-357)||(45274364-45274440)
chr4 (313-361)||(48743807-48743855)
chr4 (305-361)||(55596046-55596102)
[»] chr7 (20 HSPs)
chr7 (273-361)||(21153149-21153237)
chr7 (286-361)||(27075565-27075640)
chr7 (286-361)||(27202671-27202746)
chr7 (275-361)||(36920882-36920968)
chr7 (286-361)||(42640940-42641015)
chr7 (297-361)||(44596054-44596118)
chr7 (280-361)||(33212123-33212204)
chr7 (313-375)||(2756845-2756907)
chr7 (275-361)||(27330915-27331001)
chr7 (303-361)||(42276189-42276247)
chr7 (316-361)||(6822464-6822509)
chr7 (305-377)||(37149393-37149465)
chr7 (328-371)||(23329996-23330039)
chr7 (327-365)||(34304620-34304658)
chr7 (452-482)||(42276091-42276121)
chr7 (322-363)||(28081721-28081762)
chr7 (304-357)||(30769576-30769629)
chr7 (95-181)||(39198370-39198458)
chr7 (317-361)||(35212887-35212931)
chr7 (327-367)||(47905056-47905096)
[»] chr8 (27 HSPs)
chr8 (280-361)||(40719537-40719618)
chr8 (274-361)||(39153571-39153658)
chr8 (44-114)||(3462126-3462196)
chr8 (280-361)||(9550316-9550397)
chr8 (275-357)||(31806400-31806482)
chr8 (292-380)||(30608615-30608703)
chr8 (273-361)||(9048202-9048290)
chr8 (275-361)||(34996248-34996334)
chr8 (287-361)||(35819034-35819108)
chr8 (305-361)||(11089673-11089730)
chr8 (315-376)||(30129491-30129552)
chr8 (297-361)||(4169829-4169893)
chr8 (273-361)||(21273596-21273684)
chr8 (327-361)||(11879430-11879464)
chr8 (327-361)||(11896846-11896880)
chr8 (305-375)||(27631030-27631100)
chr8 (315-365)||(43602351-43602401)
chr8 (456-485)||(1646253-1646282)
chr8 (292-361)||(16808678-16808747)
chr8 (452-481)||(34494679-34494708)
chr8 (304-361)||(38504267-38504324)
chr8 (305-361)||(9431203-9431259)
chr8 (317-361)||(36497758-36497802)
chr8 (456-484)||(41776184-41776212)
chr8 (299-371)||(42651007-42651079)
chr8 (315-351)||(43587748-43587784)
chr8 (450-482)||(43715875-43715907)
[»] chr6 (14 HSPs)
chr6 (274-361)||(26391170-26391257)
chr6 (292-357)||(27102200-27102266)
chr6 (292-357)||(27144022-27144088)
chr6 (315-379)||(2881412-2881476)
chr6 (281-365)||(15098831-15098915)
chr6 (305-369)||(27334953-27335017)
chr6 (305-369)||(27395693-27395757)
chr6 (316-361)||(13658401-13658446)
chr6 (294-354)||(8778779-8778839)
chr6 (305-365)||(32784831-32784891)
chr6 (304-361)||(28883663-28883720)
chr6 (315-375)||(2862155-2862215)
chr6 (315-375)||(3800677-3800737)
chr6 (305-361)||(17835709-17835765)
[»] chr1 (23 HSPs)
chr1 (275-361)||(11570251-11570337)
chr1 (292-361)||(10302248-10302317)
chr1 (292-361)||(32811769-32811838)
chr1 (303-361)||(21728150-21728208)
chr1 (292-361)||(8670169-8670238)
chr1 (292-361)||(24136825-24136894)
chr1 (292-361)||(44671941-44672010)
chr1 (292-361)||(12708193-12708262)
chr1 (292-361)||(12717738-12717807)
chr1 (292-361)||(42615954-42616023)
chr1 (292-361)||(51848979-51849048)
chr1 (327-363)||(7503560-7503596)
chr1 (305-361)||(35043638-35043694)
chr1 (316-363)||(18540984-18541031)
chr1 (315-361)||(25302573-25302619)
chr1 (299-361)||(40053003-40053065)
chr1 (452-482)||(45042261-45042291)
chr1 (292-361)||(950350-950419)
chr1 (315-352)||(5383865-5383902)
chr1 (304-365)||(8905821-8905882)
chr1 (452-481)||(15182624-15182653)
chr1 (456-488)||(26585218-26585250)
chr1 (305-361)||(50777341-50777397)
[»] scaffold0024 (1 HSPs)
scaffold0024 (280-361)||(92045-92126)
[»] chr2 (20 HSPs)
chr2 (275-367)||(4723657-4723749)
chr2 (286-361)||(43057562-43057637)
chr2 (305-375)||(43356401-43356471)
chr2 (292-361)||(41868274-41868343)
chr2 (292-361)||(44059498-44059567)
chr2 (299-361)||(17917486-17917548)
chr2 (313-361)||(13466001-13466049)
chr2 (305-361)||(30413650-30413706)
chr2 (305-361)||(39744512-39744568)
chr2 (316-375)||(1151612-1151671)
chr2 (314-361)||(6851586-6851633)
chr2 (316-375)||(35518358-35518417)
chr2 (452-482)||(23045093-23045123)
chr2 (299-361)||(37827697-37827759)
chr2 (271-365)||(42665696-42665790)
chr2 (316-377)||(9377687-9377748)
chr2 (316-361)||(31635739-31635784)
chr2 (456-484)||(7428431-7428459)
chr2 (273-361)||(16051275-16051362)
chr2 (327-363)||(32755773-32755809)
[»] scaffold0001 (1 HSPs)
scaffold0001 (292-361)||(404845-404914)
[»] scaffold0036 (1 HSPs)
scaffold0036 (275-361)||(18101-18186)
[»] scaffold0054 (1 HSPs)
scaffold0054 (305-361)||(31518-31574)


Alignment Details
Target: chr3 (Bit Score: 148; Significance: 7e-78; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 30 - 193
Target Start/End: Original strand, 48178399 - 48178562
Alignment:
Q  30 aattcatcctcatttttcgtgactgatggctcgacccaatgattatacaactctatcttcttgtagaaaacggaaaggcaatgttgtatgctactgtgga 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||    
T  48178399 aattcatcctcatttttcgtgactgatggctcgacccaatgattatacaacttcatcttcttgtagaaaacgaaaaggcaatgttgtatgctactgtgga 48178498  T
Q  130 gttaagtctccattggtaacttcatggacatgataatcgtgggagaagatttcacgtgagggaa 193  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48178499 gttgagtctccattggtaacttcatggacatgataatcgtgggagaagatttcacgtgagggaa 48178562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 262 - 361
Target Start/End: Original strand, 48178930 - 48179029
Alignment:
Q  262 gcctctaataattagagaagtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||    
T  48178930 gcctataataattagagaagtgatatatgcacaactctttggtacaattttcatgacaattttagttttctctctttttattggttaaaaataatagaga 48179029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 274 - 375
Target Start/End: Original strand, 40159713 - 40159814
Alignment:
Q  274 tagagaagtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagagaaagagagagaga 373  Q
    ||||| ||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||    
T  40159713 tagagtagtgatatatgtacaactctttggtacaactttcatgacaactttggttttctctcttttgattggtcaaaaataatagagagagagagagaga 40159812  T
Q  374 ga 375  Q
    ||    
T  40159813 ga 40159814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 452 - 533
Target Start/End: Original strand, 48179094 - 48179175
Alignment:
Q  452 ttagaaaatagttgtacaaatatcatttctcgtaataattattgctattccaaaatcatacaatttgtaataatctgtgtct 533  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  48179094 ttagaaaatagttgtacaaatatcatttctcgtaataattattgctattccaaaatcatacaatttggaataatcagtgtct 48179175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 280 - 361
Target Start/End: Original strand, 11335195 - 11335276
Alignment:
Q  280 agtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    ||||| ||||| ||||||||||||||||| ||| || |||||||| |||||||||| |||||||||| ||||||||||||||    
T  11335195 agtgatatatgtacaactctttggtacaacttttattacaactttagttttctctcatttgattggtcaaaaataatagaga 11335276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 280 - 361
Target Start/End: Complemental strand, 41369757 - 41369676
Alignment:
Q  280 agtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    ||||| ||||| |||  |||||||||||| ||| ||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  41369757 agtgatatatgtacacttctttggtacaacttttatgacaactttagttttctctcttttgattggtcaaaaataatagaga 41369676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 44 - 181
Target Start/End: Original strand, 21031641 - 21031780
Alignment:
Q  44 tttcgtgactgatggctcgacccaatgattatacaactctatcttcttgtagaaaacggaaaggcaatgttgtatgctactgtggagttaagtctccatt 143  Q
    |||| ||||||||||||||||| | |||||||| | ||  |||||||| | | ||  | ||||| ||  ||||||| ||| |||||||| | ||||||||    
T  21031641 tttcatgactgatggctcgacctagtgattatagagcttcatcttcttctgggaattgaaaaggtaacattgtatgttacagtggagttgattctccatt 21031740  T
Q  144 ggtaacttcatggac--atgataatcgtgggagaagattt 181  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  21031741 ggtaacttcatggacatatgataatcgtgggagaagattt 21031780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 275 - 361
Target Start/End: Original strand, 51032514 - 51032600
Alignment:
Q  275 agagaagtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    |||| ||||| ||||| |||||| |||  ||||| |||||||||||||||  |||||| ||||||||||||| ||||||||||||||    
T  51032514 agagtagtgatatatgtacaacttttttatacaactttcatgacaactttaattttctatcttttgattggtcaaaaataatagaga 51032600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 280 - 361
Target Start/End: Original strand, 31017290 - 31017370
Alignment:
Q  280 agtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    ||||| ||||| ||||||||||| || | || | |||||||||||| ||||||||| |||||||||| ||||||||||||||    
T  31017290 agtgatatatgtacaactctttgataaacttct-atgacaactttgattttctctcatttgattggtaaaaaataatagaga 31017370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 361
Target Start/End: Original strand, 13724332 - 13724384
Alignment:
Q  309 ttttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    ||||||||||||||||| ||||||||||||| |||||| |||||||| |||||    
T  13724332 ttttcatgacaactttgattttctctcttttaattggtcaaaaataacagaga 13724384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 490 - 533
Target Start/End: Original strand, 48179478 - 48179521
Alignment:
Q  490 ttattgctattccaaaatcatacaatttgtaataatctgtgtct 533  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||    
T  48179478 ttattgctattccaaaatcatacaatttggaataatcagtgtct 48179521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 490 - 533
Target Start/End: Original strand, 48179824 - 48179867
Alignment:
Q  490 ttattgctattccaaaatcatacaatttgtaataatctgtgtct 533  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||    
T  48179824 ttattgctattccaaaatcatacaatttggaataatcagtgtct 48179867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 286 - 361
Target Start/End: Complemental strand, 50745532 - 50745457
Alignment:
Q  286 atatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    ||||| ||||||||||||||||| ||  |||||||||||  || |||||| |||||||||| ||| ||||||||||    
T  50745532 atatgtacaactctttggtacaacttctatgacaactttaattgtctctcatttgattggtaaaagataatagaga 50745457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 274 - 379
Target Start/End: Complemental strand, 18713787 - 18713682
Alignment:
Q  274 tagagaagtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagagaaagagagagaga 373  Q
    ||||| ||||| ||||| |||||  ||||| |||||||| |||||||||||  || |||||||| | ||||||  ||||||||||||| ||| | ||| |    
T  18713787 tagagtagtgatatatgtacaaccatttggaacaattttaatgacaactttcattctctctcttctcattggtccaaaataatagagagagaaaaagaaa 18713688  T
Q  374 gaaaga 379  Q
    ||||||    
T  18713687 gaaaga 18713682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 490 - 531
Target Start/End: Original strand, 48179305 - 48179346
Alignment:
Q  490 ttattgctattccaaaatcatacaatttgtaataatctgtgt 531  Q
    ||||||||||||||||||||||||||||| ||||||| ||||    
T  48179305 ttattgctattccaaaatcatacaatttggaataatcagtgt 48179346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 361
Target Start/End: Original strand, 52678511 - 52678567
Alignment:
Q  305 acaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    |||| |||||||| ||||||| |||||||| ||||||||||||||||  ||||||||    
T  52678511 acaactttcatgataactttgtttttctctattttgattggttaaaatcaatagaga 52678567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 361
Target Start/End: Complemental strand, 7949932 - 7949885
Alignment:
Q  314 atgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    |||||||||||  |||||||||||||||||||||||||| ||| ||||    
T  7949932 atgacaactttatttttctctcttttgattggttaaaaaaaatggaga 7949885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 490 - 525
Target Start/End: Original strand, 48179651 - 48179686
Alignment:
Q  490 ttattgctattccaaaatcatacaatttgtaataat 525  Q
    ||||||||||||||||||||||||||||| ||||||    
T  48179651 ttattgctattccaaaatcatacaatttggaataat 48179686  T

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Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 375
Target Start/End: Original strand, 50025614 - 50025673
Alignment:
Q  316 gacaactttggttttctctcttttgattggttaaaaataatagagaaagagagagagaga 375  Q
    |||||||||| | ||||||||| | |||||| ||||| |||||||| |||||||||||||    
T  50025614 gacaactttgttgttctctcttctcattggtcaaaaacaatagagagagagagagagaga 50025673  T

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Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 361
Target Start/End: Original strand, 55344223 - 55344270
Alignment:
Q  314 atgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    |||||||||||  ||||||||||||| |||||||||||| ||||||||    
T  55344223 atgacaacttttcttttctctcttttcattggttaaaaacaatagaga 55344270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 305 - 359
Target Start/End: Original strand, 12762861 - 12762915
Alignment:
Q  305 acaattttcatgacaactttggttttctctcttttgattggttaaaaataataga 359  Q
    |||||||| |||||||||||  ||||||||||||| |||||| ||||| ||||||    
T  12762861 acaatttttatgacaactttctttttctctctttttattggtaaaaaacaataga 12762915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 319 - 361
Target Start/End: Complemental strand, 39172825 - 39172783
Alignment:
Q  319 aactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    |||||||||||||||| |||| |||||| ||||||||||||||    
T  39172825 aactttggttttctctattttaattggtcaaaaataatagaga 39172783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 452 - 482
Target Start/End: Original strand, 40159879 - 40159909
Alignment:
Q  452 ttagaaaatagttgtacaaatatcatttctc 482  Q
    |||||||||||||||||||||||||||||||    
T  40159879 ttagaaaatagttgtacaaatatcatttctc 40159909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 315 - 361
Target Start/End: Complemental strand, 43900915 - 43900869
Alignment:
Q  315 tgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    ||||||||||| ||||||||||| | |||||||||||||||| ||||    
T  43900915 tgacaactttgtttttctctcttcttattggttaaaaataatggaga 43900869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 352
Target Start/End: Original strand, 25542899 - 25542936
Alignment:
Q  315 tgacaactttggttttctctcttttgattggttaaaaa 352  Q
    ||||||||||||||| |||||||||||||||| |||||    
T  25542899 tgacaactttggtttcctctcttttgattggtcaaaaa 25542936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 352
Target Start/End: Original strand, 31007280 - 31007317
Alignment:
Q  315 tgacaactttggttttctctcttttgattggttaaaaa 352  Q
    ||||||||||| ||| ||||||||||||||||||||||    
T  31007280 tgacaactttgttttcctctcttttgattggttaaaaa 31007317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 361
Target Start/End: Original strand, 39350486 - 39350543
Alignment:
Q  304 tacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    ||||||||| |||| || ||| |||||||||  |||||||||| ||||||||||||||    
T  39350486 tacaatttttatgataattttagttttctcttatttgattggtcaaaaataatagaga 39350543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 361
Target Start/End: Original strand, 47988414 - 47988459
Alignment:
Q  316 gacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    |||||||||| ||||||||  |||||||||| ||||||||||||||    
T  47988414 gacaactttgattttctcttctttgattggtcaaaaataatagaga 47988459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 361
Target Start/End: Original strand, 47997701 - 47997746
Alignment:
Q  316 gacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    |||||||||| ||||||||  |||||||||| ||||||||||||||    
T  47997701 gacaactttgattttctcttctttgattggtcaaaaataatagaga 47997746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 361
Target Start/End: Original strand, 48006988 - 48007033
Alignment:
Q  316 gacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    |||||||||| ||||||||  |||||||||| ||||||||||||||    
T  48006988 gacaactttgattttctcttctttgattggtcaaaaataatagaga 48007033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 327 - 375
Target Start/End: Complemental strand, 43460519 - 43460471
Alignment:
Q  327 ttttctctcttttgattggttaaaaataatagagaaagagagagagaga 375  Q
    ||||||||||| | |||||| ||||| |||||||| |||||||||||||    
T  43460519 ttttctctcttcttattggtcaaaaacaatagagagagagagagagaga 43460471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 452 - 480
Target Start/End: Original strand, 47988526 - 47988554
Alignment:
Q  452 ttagaaaatagttgtacaaatatcatttc 480  Q
    |||||||||||||||||||||||||||||    
T  47988526 ttagaaaatagttgtacaaatatcatttc 47988554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 452 - 480
Target Start/End: Original strand, 47997813 - 47997841
Alignment:
Q  452 ttagaaaatagttgtacaaatatcatttc 480  Q
    |||||||||||||||||||||||||||||    
T  47997813 ttagaaaatagttgtacaaatatcatttc 47997841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 452 - 480
Target Start/End: Original strand, 48007100 - 48007128
Alignment:
Q  452 ttagaaaatagttgtacaaatatcatttc 480  Q
    |||||||||||||||||||||||||||||    
T  48007100 ttagaaaatagttgtacaaatatcatttc 48007128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 273 - 361
Target Start/End: Complemental strand, 51487931 - 51487843
Alignment:
Q  273 ttagagaagtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    |||||||||||| || || ||| ||||||  ||||| |||||||||||||||  |||||| | || |||||||  ||||| ||||||||    
T  51487931 ttagagaagtgatatttgtacatctctttcttacaactttcatgacaactttatttttcttttttatgattggccaaaaacaatagaga 51487843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 2e-26; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 280 - 361
Target Start/End: Original strand, 36415955 - 36416036
Alignment:
Q  280 agtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    ||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  36415955 agtgatatatgtacaactctttggtacaactttcatgacaactttggttttctctcttttgattggtcaaaaatactagaga 36416036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 280 - 361
Target Start/End: Complemental strand, 21023476 - 21023395
Alignment:
Q  280 agtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    ||||| ||||| |||||||||||||||||||||||||| |||||| ||||||| |||||||||| || ||||||||||||||    
T  21023476 agtgatatatgtacaactctttggtacaattttcatgataactttagttttctatcttttgatttgtcaaaaataatagaga 21023395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 292 - 361
Target Start/End: Complemental strand, 25038246 - 25038177
Alignment:
Q  292 acaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    ||||||||||||||||| |||||||| |||||| ||||| ||||||||||||||||||||||||||||||    
T  25038246 acaactctttggtacaactttcatgataactttagttttatctcttttgattggttaaaaataatagaga 25038177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 280 - 361
Target Start/End: Complemental strand, 32425130 - 32425049
Alignment:
Q  280 agtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    ||||| ||||| |||||| |||||||||| |||||||||||||||  |||||| ||||||||||||| ||||||||||||||    
T  32425130 agtgacatatgtacaactatttggtacaactttcatgacaactttaattttctatcttttgattggtcaaaaataatagaga 32425049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 275 - 361
Target Start/End: Complemental strand, 285409 - 285323
Alignment:
Q  275 agagaagtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    |||| ||||| ||||| |||||||||| |||||| ||||||| |||||||  |||||| ||||||||||||| |||||||| |||||    
T  285409 agagtagtgatatatgtacaactctttagtacaactttcatgccaactttaattttctatcttttgattggtcaaaaataacagaga 285323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 280 - 361
Target Start/End: Original strand, 15290914 - 15290995
Alignment:
Q  280 agtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    ||||| ||||| ||||||||||||||||| ||| || | || |||  ||||||| |||||||||||| ||||||||||||||    
T  15290914 agtgatatatgtacaactctttggtacaacttttataataattttaattttctcccttttgattggtcaaaaataatagaga 15290995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 315 - 361
Target Start/End: Original strand, 7077267 - 7077313
Alignment:
Q  315 tgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    ||||||||||| |||||||||||||||||||| ||||||||| ||||    
T  7077267 tgacaactttgtttttctctcttttgattggtcaaaaataatggaga 7077313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 273 - 361
Target Start/End: Complemental strand, 27341054 - 27340966
Alignment:
Q  273 ttagagaagtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    |||||| ||||| ||||| ||||   |||||||||||||| |||||||||||  ||| ||||||||| ||||||  |||| ||||||||    
T  27341054 ttagagtagtgatatatgtacaatcatttggtacaattttgatgacaactttcatttgctctctttttattggtccaaaacaatagaga 27340966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 317 - 375
Target Start/End: Complemental strand, 1108139 - 1108081
Alignment:
Q  317 acaactttggttttctctcttttgattggttaaaaataatagagaaagagagagagaga 375  Q
    ||||||||| | ||||||||| | |||||| ||||| |||||||| |||||||||||||    
T  1108139 acaactttgttgttctctcttctcattggtcaaaaacaatagagagagagagagagaga 1108081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 361
Target Start/End: Complemental strand, 11306882 - 11306793
Alignment:
Q  272 attagagaagtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    ||||||| ||||| || || |||||| |||| ||||| |||   ||||||||   ||||||||||||| |||||||||||| ||||||||    
T  11306882 attagagtagtgatatttgaacaactatttgatacaacttttgagacaacttcttttttctctcttttcattggttaaaaacaatagaga 11306793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 313 - 361
Target Start/End: Original strand, 32873075 - 32873123
Alignment:
Q  313 catgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    ||||||||||||| |||||||| ||||||||||| ||||  ||||||||    
T  32873075 catgacaactttgtttttctctattttgattggtcaaaatcaatagaga 32873123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 41192728 - 41192684
Alignment:
Q  317 acaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    ||||||||| |||||||||||||||||||| ||||| ||| ||||    
T  41192728 acaactttgtttttctctcttttgattggtcaaaaacaatggaga 41192684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 280 - 361
Target Start/End: Original strand, 39880923 - 39881004
Alignment:
Q  280 agtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    ||||| ||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  39880923 agtgatatatgtacaactctttcgtacaactttcatgacaactttggttttctctcttttgattggtcaaaaataatagaga 39881004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 275 - 361
Target Start/End: Original strand, 29406925 - 29407011
Alignment:
Q  275 agagaagtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    |||| ||||| ||||| ||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||| ||||||||||||||    
T  29406925 agagtagtgatatatgtacaactctttggtacaactttcatgacaattttggttttctctattttgattggtaaaaaataatagaga 29407011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 275 - 365
Target Start/End: Original strand, 4489687 - 4489777
Alignment:
Q  275 agagaagtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagagaaaga 365  Q
    |||| ||||| ||||| ||||||||||||||||| |||||||||||||||  |||||| ||||||| ||||| ||||||||||||||||||    
T  4489687 agagtagtgatatatgtacaactctttggtacaactttcatgacaactttaattttctatcttttggttggtcaaaaataatagagaaaga 4489777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 275 - 361
Target Start/End: Original strand, 30890173 - 30890259
Alignment:
Q  275 agagaagtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    |||| ||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||| |||| || |||||||||||    
T  30890173 agagcagtgatatatgtacaactctttggtacaatttttatgacaactttggttttctctattttgactggtcaagaataatagaga 30890259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 292 - 361
Target Start/End: Original strand, 51540752 - 51540821
Alignment:
Q  292 acaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    ||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  51540752 acaactctttggtacaacttttatgacaattttggttttctctcttttgattggtcaaaaataatagaga 51540821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 274 - 361
Target Start/End: Original strand, 53356964 - 53357051
Alignment:
Q  274 tagagaagtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    ||||| ||||| ||||| ||||||||||||||||| ||  |||||||||||| || |||||| |||||||||| ||||||||||||||    
T  53356964 tagagtagtgatatatgtacaactctttggtacaacttctatgacaactttgattgtctctcatttgattggtcaaaaataatagaga 53357051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 292 - 361
Target Start/End: Original strand, 1562441 - 1562510
Alignment:
Q  292 acaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    |||||| |||||||||||| |   ||||||||||||||||||| ||||||||||| ||||||||||||||    
T  1562441 acaactttttggtacaattctttggacaactttggttttctcttttttgattggtcaaaaataatagaga 1562510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 280 - 361
Target Start/End: Complemental strand, 55996598 - 55996517
Alignment:
Q  280 agtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    ||||| ||||| |||||| |||||||||||| | ||||||||||   |||||| ||||||||||||| ||||||||||||||    
T  55996598 agtgatatatgtacaactttttggtacaattataatgacaacttcaattttctatcttttgattggtcaaaaataatagaga 55996517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 274 - 361
Target Start/End: Complemental strand, 12241241 - 12241155
Alignment:
Q  274 tagagaagtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    ||||| ||||| || || |||||||||| ||||||  || |||||||||||  ||||||||||||||||||| |||||||||||||||    
T  12241241 tagagtagtgatatttgtacaactcttttgtacaacctttatgacaactttatttttctctcttttgattgg-taaaaataatagaga 12241155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 271 - 358
Target Start/End: Complemental strand, 17805639 - 17805552
Alignment:
Q  271 aattagagaagtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatag 358  Q
    |||| ||| ||||| || || |||| |||||||||||||||| |||| || ||||||||| ||||||||||||| | |||||||||||    
T  17805639 aatttgagtagtgatatgtgtacaattctttggtacaatttttatgataattttggttttttctcttttgattgatcaaaaataatag 17805552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 46363910 - 46363954
Alignment:
Q  317 acaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||    
T  46363910 acaactttggttttctctcttttgattggtcaaaaatactagaga 46363954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 452 - 490
Target Start/End: Complemental strand, 12241088 - 12241050
Alignment:
Q  452 ttagaaaatagttgtacaaatatcatttctcgtaataat 490  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  12241088 ttagaaaatagttgtacaaatatcatttctcttaataat 12241050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 361
Target Start/End: Original strand, 43759068 - 43759154
Alignment:
Q  275 agagaagtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    |||| ||||| || || |||||||||| ||||||  || |||||||| ||| |||||| |||||||||| || ||||||||||||||    
T  43759068 agagtagtgatatttgtacaactcttttgtacaacctttatgacaaccttgtttttctatcttttgatttgtcaaaaataatagaga 43759154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 327 - 377
Target Start/End: Original strand, 51296117 - 51296167
Alignment:
Q  327 ttttctctcttttgattggttaaaaataatagagaaagagagagagagaaa 377  Q
    ||||||||||||  |||||| |||||||||||||| |||||||||||||||    
T  51296117 ttttctctctttctattggtcaaaaataatagagagagagagagagagaaa 51296167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 292 - 361
Target Start/End: Original strand, 25725599 - 25725668
Alignment:
Q  292 acaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    |||||||||| ||||||  || |||||||||||| |||||| || |||| ||||| ||||||||||||||    
T  25725599 acaactcttttgtacaacctttatgacaactttgtttttctatcatttggttggtcaaaaataatagaga 25725668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 42177980 - 42178024
Alignment:
Q  317 acaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    ||||||||| ||||||||||| | |||||||||||||||||||||    
T  42177980 acaactttgtttttctctcttcttattggttaaaaataatagaga 42178024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 361
Target Start/End: Complemental strand, 43358766 - 43358710
Alignment:
Q  305 acaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    |||||||| |||||||||||| |||||||| ||||||||||| ||||  ||||||||    
T  43358766 acaatttttatgacaactttgtttttctctattttgattggtcaaaatcaatagaga 43358710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 361
Target Start/End: Original strand, 33820264 - 33820310
Alignment:
Q  314 atgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    |||||||||||  ||||||||||||||||||| |||||||||||||||    
T  33820264 atgacaactttatttttctctcttttgattgg-taaaaataatagaga 33820310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 365
Target Start/End: Original strand, 35694506 - 35694571
Alignment:
Q  303 gtacaattttcatgacaactttggttttct---ctcttttgattggttaaaaataatagagaaaga 365  Q
    |||||| ||| ||||||||||||||||| |   |||||||||||||| |||||||||||| |||||    
T  35694506 gtacaacttttatgacaactttggtttttttttctcttttgattggtcaaaaataatagaaaaaga 35694571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 452 - 482
Target Start/End: Original strand, 9472554 - 9472584
Alignment:
Q  452 ttagaaaatagttgtacaaatatcatttctc 482  Q
    |||||||||||||||||||||||||||||||    
T  9472554 ttagaaaatagttgtacaaatatcatttctc 9472584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 314 - 352
Target Start/End: Original strand, 20956509 - 20956547
Alignment:
Q  314 atgacaactttggttttctctcttttgattggttaaaaa 352  Q
    |||||||||||| |||||||||||||||||||| |||||    
T  20956509 atgacaactttgtttttctctcttttgattggtcaaaaa 20956547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 315 - 369
Target Start/End: Complemental strand, 22071641 - 22071587
Alignment:
Q  315 tgacaactttggttttctctcttttgattggttaaaaataatagagaaagagaga 369  Q
    ||||||||||  ||||||||||| | |||||||||||| |||||||| |||||||    
T  22071641 tgacaactttctttttctctcttcttattggttaaaaacaatagagagagagaga 22071587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 452 - 482
Target Start/End: Original strand, 33820377 - 33820407
Alignment:
Q  452 ttagaaaatagttgtacaaatatcatttctc 482  Q
    |||||||||||||||||||||||||||||||    
T  33820377 ttagaaaatagttgtacaaatatcatttctc 33820407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 315 - 361
Target Start/End: Original strand, 46844169 - 46844215
Alignment:
Q  315 tgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    ||||||||||| ||||||||||||| |||||||||||| ||| ||||    
T  46844169 tgacaactttgtttttctctctttttattggttaaaaacaatggaga 46844215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 315 - 361
Target Start/End: Complemental strand, 56025399 - 56025353
Alignment:
Q  315 tgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    ||||||||||| |||||||||||||||||||| ||||| ||| ||||    
T  56025399 tgacaactttgattttctctcttttgattggtcaaaaacaatggaga 56025353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 361
Target Start/End: Complemental strand, 40756063 - 40756018
Alignment:
Q  316 gacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    |||||||||| ||||||||  |||||||||| ||||||||||||||    
T  40756063 gacaactttgattttctcttctttgattggtcaaaaataatagaga 40756018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 315 - 359
Target Start/End: Original strand, 389586 - 389630
Alignment:
Q  315 tgacaactttggttttctctcttttgattggttaaaaataataga 359  Q
    ||||||||||| |||||||| ||||||||||| |||| |||||||    
T  389586 tgacaactttgtttttctctattttgattggtcaaaattaataga 389630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 456 - 488
Target Start/End: Complemental strand, 4974137 - 4974105
Alignment:
Q  456 aaaatagttgtacaaatatcatttctcgtaata 488  Q
    ||||||||||||||||||||||||||| |||||    
T  4974137 aaaatagttgtacaaatatcatttctcataata 4974105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 454 - 482
Target Start/End: Original strand, 25523241 - 25523269
Alignment:
Q  454 agaaaatagttgtacaaatatcatttctc 482  Q
    |||||||||||||||||||||||||||||    
T  25523241 agaaaatagttgtacaaatatcatttctc 25523269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 456 - 484
Target Start/End: Complemental strand, 36110160 - 36110132
Alignment:
Q  456 aaaatagttgtacaaatatcatttctcgt 484  Q
    |||||||||||||||||||||||||||||    
T  36110160 aaaatagttgtacaaatatcatttctcgt 36110132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 313 - 361
Target Start/End: Original strand, 36812329 - 36812377
Alignment:
Q  313 catgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    ||||||||||||| |||||||| ||||||||||| ||||  ||||||||    
T  36812329 catgacaactttgtttttctctattttgattggtcaaaatcaatagaga 36812377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 275 - 359
Target Start/End: Original strand, 42915107 - 42915191
Alignment:
Q  275 agagaagtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataataga 359  Q
    |||| ||||| || || |||||| |||| ||||| |||  |||||||||   ||||||||||||| |||||||||||| ||||||    
T  42915107 agagtagtgatatttgaacaactatttgatacaacttttgtgacaacttcttttttctctcttttcattggttaaaaacaataga 42915191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 456 - 484
Target Start/End: Original strand, 43511692 - 43511720
Alignment:
Q  456 aaaatagttgtacaaatatcatttctcgt 484  Q
    |||||||||||||||||||||||||||||    
T  43511692 aaaatagttgtacaaatatcatttctcgt 43511720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 281 - 357
Target Start/End: Complemental strand, 45274440 - 45274364
Alignment:
Q  281 gtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataata 357  Q
    |||| ||||| |||||| ||||| |||| ||| ||||||||| |  ||||||||||||| ||||||  |||||||||    
T  45274440 gtgatatatgtacaactatttgggacaactttgatgacaactctcattttctctcttttcattggtccaaaataata 45274364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 313 - 361
Target Start/End: Complemental strand, 48743855 - 48743807
Alignment:
Q  313 catgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    ||||||||||||| |||||||| ||||||||||| ||||  ||||||||    
T  48743855 catgacaactttgtttttctctattttgattggtcaaaatcaatagaga 48743807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 305 - 361
Target Start/End: Complemental strand, 55596102 - 55596046
Alignment:
Q  305 acaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    |||| |||||||||||||| | |||||||| ||||||||||| ||||  ||||||||    
T  55596102 acaactttcatgacaacttcgtttttctctattttgattggtcaaaatcaatagaga 55596046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 6e-26; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 273 - 361
Target Start/End: Complemental strand, 21153237 - 21153149
Alignment:
Q  273 ttagagaagtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    |||||| ||||| ||||| |||||| |||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  21153237 ttagagtagtgatatatgtacaactttttggtacaactttcatgacaactttgattttctctcttttgattggtcaaaaataatagaga 21153149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 286 - 361
Target Start/End: Complemental strand, 27075640 - 27075565
Alignment:
Q  286 atatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    ||||| ||||||||||||||||| ||| |||| || ||||||||||||||||||||||||| ||||||||||||||    
T  27075640 atatgtacaactctttggtacaacttttatgataattttggttttctctcttttgattggtcaaaaataatagaga 27075565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 286 - 361
Target Start/End: Original strand, 27202671 - 27202746
Alignment:
Q  286 atatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    ||||| ||||||||||||||||| ||| |||| || ||||||||||||||||||||||||| ||||||||||||||    
T  27202671 atatgtacaactctttggtacaacttttatgataattttggttttctctcttttgattggtcaaaaataatagaga 27202746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 275 - 361
Target Start/End: Complemental strand, 36920968 - 36920882
Alignment:
Q  275 agagaagtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    |||| ||||| ||||| ||||||||||||||||| ||| || ||||||||| ||||||||| |||||||||| ||||||||||||||    
T  36920968 agagtagtgatatatgtacaactctttggtacaacttttattacaactttgattttctctcatttgattggtcaaaaataatagaga 36920882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 286 - 361
Target Start/End: Complemental strand, 42641015 - 42640940
Alignment:
Q  286 atatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    ||||| ||||||||||||||||| ||| |||| ||||||| |||||||| ||||||||||| ||||||||||||||    
T  42641015 atatgtacaactctttggtacaacttttatgataactttgattttctcttttttgattggtcaaaaataatagaga 42640940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 297 - 361
Target Start/End: Original strand, 44596054 - 44596118
Alignment:
Q  297 tctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    |||||||||||| ||| |||||||||||||||||||||| |||||||||| ||||||| ||||||    
T  44596054 tctttggtacaaattttatgacaactttggttttctctcatttgattggtcaaaaatattagaga 44596118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 280 - 361
Target Start/End: Complemental strand, 33212204 - 33212123
Alignment:
Q  280 agtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    ||||| ||||| ||||||||||||||||| ||  |||||||||||  || |||||| |||||||||| ||||||||||||||    
T  33212204 agtgatatatgtacaactctttggtacaacttctatgacaactttaattgtctctcatttgattggtcaaaaataatagaga 33212123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 313 - 375
Target Start/End: Original strand, 2756845 - 2756907
Alignment:
Q  313 catgacaactttggttttctctcttttgattggttaaaaataatagagaaagagagagagaga 375  Q
    ||||||||||||| |||||||| ||||||||||| ||||  |||||||| |||||||||||||    
T  2756845 catgacaactttgtttttctctattttgattggtcaaaatcaatagagagagagagagagaga 2756907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 275 - 361
Target Start/End: Original strand, 27330915 - 27331001
Alignment:
Q  275 agagaagtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    |||| ||||| ||||| ||||||||||||||||| |||||||| || |||  |||| | ||||| ||||||| ||||||||||||||    
T  27330915 agagtagtgatatatgtacaactctttggtacaactttcatgataattttaattttttatctttagattggtcaaaaataatagaga 27331001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 303 - 361
Target Start/End: Complemental strand, 42276247 - 42276189
Alignment:
Q  303 gtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    |||||||||| ||| |||||||||||||||||| |||||| ||| ||||||||||||||    
T  42276247 gtacaatttttatggcaactttggttttctctcatttgataggtcaaaaataatagaga 42276189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 316 - 361
Target Start/End: Original strand, 6822464 - 6822509
Alignment:
Q  316 gacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    |||||||||||||||||||  |||||||||| ||||||||||||||    
T  6822464 gacaactttggttttctcttctttgattggtcaaaaataatagaga 6822509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 377
Target Start/End: Original strand, 37149393 - 37149465
Alignment:
Q  305 acaattttcatgacaactttggttttctctcttttgattggttaaaaataatagagaaagagagagagagaaa 377  Q
    |||| ||| |||||||| ||| |||||| |||| | |||||| ||||| |||||||| |||||||||||||||    
T  37149393 acaacttttatgacaaccttgtttttctttcttcttattggtaaaaaacaatagagagagagagagagagaaa 37149465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 371
Target Start/End: Complemental strand, 23330039 - 23329996
Alignment:
Q  328 tttctctcttttgattggttaaaaataatagagaaagagagaga 371  Q
    |||||||||||| |||||| |||||||||||||| |||||||||    
T  23330039 tttctctctttttattggtaaaaaataatagagagagagagaga 23329996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 327 - 365
Target Start/End: Original strand, 34304620 - 34304658
Alignment:
Q  327 ttttctctcttttgattggttaaaaataatagagaaaga 365  Q
    ||||||||||||| |||||| ||||||||||||||||||    
T  34304620 ttttctctcttttcattggtcaaaaataatagagaaaga 34304658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 452 - 482
Target Start/End: Complemental strand, 42276121 - 42276091
Alignment:
Q  452 ttagaaaatagttgtacaaatatcatttctc 482  Q
    |||||||||||||||||||||||||||||||    
T  42276121 ttagaaaatagttgtacaaatatcatttctc 42276091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 363
Target Start/End: Original strand, 28081721 - 28081762
Alignment:
Q  322 tttggttttctctcttttgattggttaaaaataatagagaaa 363  Q
    ||||||||||||| ||||||| ||| ||||||||||||||||    
T  28081721 tttggttttctcttttttgataggtaaaaaataatagagaaa 28081762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 357
Target Start/End: Original strand, 30769576 - 30769629
Alignment:
Q  304 tacaattttcatgacaactttggttttctctcttttgattggttaaaaataata 357  Q
    ||||| |||||||||||||||| ||||||||| | |||||||| ||||| ||||    
T  30769576 tacaactttcatgacaactttgtttttctctcctatgattggtcaaaaacaata 30769629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 181
Target Start/End: Original strand, 39198370 - 39198458
Alignment:
Q  95 gaaaacggaaaggcaatgttgtatgctactgtggagttaagtctccattggtaacttcatggaca--tgataatcgtgggagaagattt 181  Q
    ||||||| ||||| |||||| |||| || ||||||||| | ||||| | | |||||| |||||||  |||||||| |||||||||||||    
T  39198370 gaaaacgaaaaggtaatgttctatgttattgtggagttgattctccgtcgttaactttatggacagatgataatcatgggagaagattt 39198458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 35212887 - 35212931
Alignment:
Q  317 acaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    ||||||||| | ||||||||| | |||||||||||||||||||||    
T  35212887 acaactttgttgttctctcttctcattggttaaaaataatagaga 35212931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 327 - 367
Target Start/End: Original strand, 47905056 - 47905096
Alignment:
Q  327 ttttctctcttttgattggttaaaaataatagagaaagaga 367  Q
    ||||||||||||| |||||| ||||||||| ||||||||||    
T  47905056 ttttctctcttttcattggtaaaaaataatggagaaagaga 47905096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 4e-24; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 280 - 361
Target Start/End: Original strand, 40719537 - 40719618
Alignment:
Q  280 agtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    ||||| ||||| |||||||||| |||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  40719537 agtgatatatgtacaactctttcgtacaacttttatgacaactttggttttctctcttttgattggtcaaaaataatagaga 40719618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 274 - 361
Target Start/End: Original strand, 39153571 - 39153658
Alignment:
Q  274 tagagaagtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    ||||| ||||| ||||| |||||||||| ||| || |||||||| ||||||| |||||||||||||||||||| ||||||||||||||    
T  39153571 tagagtagtgatatatgtacaactctttagtataactttcatgataactttgattttctctcttttgattggtcaaaaataatagaga 39153658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 44 - 114
Target Start/End: Original strand, 3462126 - 3462196
Alignment:
Q  44 tttcgtgactgatggctcgacccaatgattatacaactctatcttcttgtagaaaacggaaaggcaatgtt 114  Q
    ||||||||||||||||||||| ||||||||||||| ||  |||||||| ||||||||||||||||||||||    
T  3462126 tttcgtgactgatggctcgactcaatgattatacagcttcatcttcttctagaaaacggaaaggcaatgtt 3462196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 280 - 361
Target Start/End: Original strand, 9550316 - 9550397
Alignment:
Q  280 agtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    ||||| ||||| ||||||||||| ||||| |||||||||||||||  |||||| ||||||||| ||| ||||||||||||||    
T  9550316 agtgatatatgtacaactctttgatacaactttcatgacaactttaattttctatcttttgataggtcaaaaataatagaga 9550397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 275 - 357
Target Start/End: Complemental strand, 31806482 - 31806400
Alignment:
Q  275 agagaagtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataata 357  Q
    |||| ||||| ||||| | ||||||||||||||| ||| || |||||||| |||||||||| |||||||||| ||||||||||    
T  31806482 agagtagtgatatatgtataactctttggtacaacttttattacaactttagttttctctcatttgattggtaaaaaataata 31806400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 292 - 380
Target Start/End: Original strand, 30608615 - 30608703
Alignment:
Q  292 acaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagagaaagagagagagagaaagaa 380  Q
    |||||||||| ||||||  || |||||||||||| |||||| ||||||||||||| |||||||| ||||| ||| | ||| ||||||||    
T  30608615 acaactcttttgtacaacctttatgacaactttgtttttctatcttttgattggtaaaaaataacagagagagaaaaagaaagaaagaa 30608703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 273 - 361
Target Start/End: Original strand, 9048202 - 9048290
Alignment:
Q  273 ttagagaagtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    |||||| ||||| || || |||||||||| ||||||  || |||||||||||  || |||||||||||||| || ||||||||||||||    
T  9048202 ttagagtagtgatatttgtacaactcttttgtacaacatttatgacaactttatttctctctcttttgatttgtcaaaaataatagaga 9048290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 361
Target Start/End: Original strand, 34996248 - 34996334
Alignment:
Q  275 agagaagtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    |||| ||||| ||||| |||||| |||||||||| ||| |||||||||||  ||| ||||||||| ||||||   ||||||||||||    
T  34996248 agagtagtgatatatgtacaactatttggtacaactttgatgacaactttcatttgctctcttttcattggtccgaaataatagaga 34996334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 287 - 361
Target Start/End: Complemental strand, 35819108 - 35819034
Alignment:
Q  287 tatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    |||| |||||| |||||||||| ||  ||||||| |||| || |||||| |||||||||| ||||||||||||||    
T  35819108 tatgtacaactttttggtacaacttctatgacaattttgattgtctctcatttgattggtcaaaaataatagaga 35819034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 305 - 361
Target Start/End: Complemental strand, 11089730 - 11089673
Alignment:
Q  305 acaattttcatgacaactttggttttctctcttttgattggtta-aaaataatagaga 361  Q
    ||||||||  ||||||||||| |||||||| ||||||||||||| |||||||||||||    
T  11089730 acaattttggtgacaactttgtttttctcttttttgattggttaaaaaataatagaga 11089673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 315 - 376
Target Start/End: Complemental strand, 30129552 - 30129491
Alignment:
Q  315 tgacaactttggttttctctcttttgattggttaaaaataatagagaaagagagagagagaa 376  Q
    ||||||||||| ||||||||||| | |||||| ||||||||| |||||||| ||||| ||||    
T  30129552 tgacaactttgcttttctctcttcttattggtcaaaaataatggagaaagaaagagatagaa 30129491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 297 - 361
Target Start/End: Complemental strand, 4169893 - 4169829
Alignment:
Q  297 tctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    |||||||||||| ||| || | || ||||||||||||| | ||||||||| ||||||||||||||    
T  4169893 tctttggtacaacttttataataattttggttttctctatcttgattggtaaaaaataatagaga 4169829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 273 - 361
Target Start/End: Original strand, 21273596 - 21273684
Alignment:
Q  273 ttagagaagtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    |||||| ||||| || || |||||| |||  ||||| |||  ||||||||||  ||||||||||||| |||||||||||| ||||||||    
T  21273596 ttagagtagtgatatttgaacaactatttcatacaacttttgtgacaacttttcttttctctcttttcattggttaaaaacaatagaga 21273684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 327 - 361
Target Start/End: Original strand, 11879430 - 11879464
Alignment:
Q  327 ttttctctcttttgattggttaaaaataatagaga 361  Q
    |||||||||||||||||||||||||||||| ||||    
T  11879430 ttttctctcttttgattggttaaaaataatggaga 11879464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 327 - 361
Target Start/End: Original strand, 11896846 - 11896880
Alignment:
Q  327 ttttctctcttttgattggttaaaaataatagaga 361  Q
    |||||||||||||||||||||||||||||| ||||    
T  11896846 ttttctctcttttgattggttaaaaataatggaga 11896880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 305 - 375
Target Start/End: Complemental strand, 27631100 - 27631030
Alignment:
Q  305 acaattttcatgacaactttggttttctctcttttgattggttaaaaataatagagaaagagagagagaga 375  Q
    |||| ||| ||||||||| |  ||||||||||||| |||||| ||||| ||||||||  ||||||||||||    
T  27631100 acaactttgatgacaactattattttctctcttttcattggtcaaaaacaatagagagggagagagagaga 27631030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 315 - 365
Target Start/End: Original strand, 43602351 - 43602401
Alignment:
Q  315 tgacaactttggttttctctcttttgattggttaaaaataatagagaaaga 365  Q
    ||||||||||| || ||||||||||||||||| ||||| |||| |||||||    
T  43602351 tgacaactttgtttctctctcttttgattggtcaaaaacaatatagaaaga 43602401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 456 - 485
Target Start/End: Complemental strand, 1646282 - 1646253
Alignment:
Q  456 aaaatagttgtacaaatatcatttctcgta 485  Q
    ||||||||||||||||||||||||||||||    
T  1646282 aaaatagttgtacaaatatcatttctcgta 1646253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 361
Target Start/End: Complemental strand, 16808747 - 16808678
Alignment:
Q  292 acaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    |||| |||||||| ||| ||| |||||||||||| | ||||||  ||||||| || ||||||||||||||    
T  16808747 acaattctttggttcaacttttatgacaactttgatcttctcttctttgattcgtcaaaaataatagaga 16808678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 481
Target Start/End: Original strand, 34494679 - 34494708
Alignment:
Q  452 ttagaaaatagttgtacaaatatcatttct 481  Q
    ||||||||||||||||||||||||||||||    
T  34494679 ttagaaaatagttgtacaaatatcatttct 34494708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 361
Target Start/End: Complemental strand, 38504324 - 38504267
Alignment:
Q  304 tacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    |||||||||  |||||| |||| |||||||||||||||||||| ||||| ||| ||||    
T  38504324 tacaattttggtgacaattttgtttttctctcttttgattggtcaaaaacaatggaga 38504267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 305 - 361
Target Start/End: Original strand, 9431203 - 9431259
Alignment:
Q  305 acaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    |||||||| ||||||| |||| |||||||| ||||||||||| ||||  ||||||||    
T  9431203 acaatttttatgacaattttgtttttctctattttgattggtcaaaatcaatagaga 9431259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 36497802 - 36497758
Alignment:
Q  317 acaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    ||||| ||| ||||||||||||| |||||||||||| ||||||||    
T  36497802 acaaccttgtttttctctctttttattggttaaaaacaatagaga 36497758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 456 - 484
Target Start/End: Complemental strand, 41776212 - 41776184
Alignment:
Q  456 aaaatagttgtacaaatatcatttctcgt 484  Q
    |||||||||||||||||||||||||||||    
T  41776212 aaaatagttgtacaaatatcatttctcgt 41776184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 299 - 371
Target Start/End: Complemental strand, 42651079 - 42651007
Alignment:
Q  299 tttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagagaaagagagaga 371  Q
    |||||||||| |||   |||||| ||| | ||||||||| | |||||||||||| |||||||| |||||||||    
T  42651079 tttggtacaacttttgagacaaccttgttgttctctcttctcattggttaaaaacaatagagagagagagaga 42651007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 315 - 351
Target Start/End: Complemental strand, 43587784 - 43587748
Alignment:
Q  315 tgacaactttggttttctctcttttgattggttaaaa 351  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  43587784 tgacaactttgtttttctctcttttgattggtaaaaa 43587748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 450 - 482
Target Start/End: Complemental strand, 43715907 - 43715875
Alignment:
Q  450 ttttagaaaatagttgtacaaatatcatttctc 482  Q
    ||||||||||| |||||||||||||||||||||    
T  43715907 ttttagaaaatggttgtacaaatatcatttctc 43715875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 6e-23; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 274 - 361
Target Start/End: Original strand, 26391170 - 26391257
Alignment:
Q  274 tagagaagtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    ||||| ||||| ||||| |||||||||||||| || ||||||||||||||| ||||||| ||||||||||||| ||||||||||||||    
T  26391170 tagagtagtgatatatgaacaactctttggtataactttcatgacaactttagttttctatcttttgattggtcaaaaataatagaga 26391257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 292 - 357
Target Start/End: Complemental strand, 27102266 - 27102200
Alignment:
Q  292 acaactctttggtacaattttcatgacaactttggttttctctc-ttttgattggttaaaaataata 357  Q
    ||||||||||||||||| |||||||||||||||| ||||||||| |||| |||||| ||||||||||    
T  27102266 acaactctttggtacaactttcatgacaactttgattttctctctttttaattggtcaaaaataata 27102200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 292 - 357
Target Start/End: Complemental strand, 27144088 - 27144022
Alignment:
Q  292 acaactctttggtacaattttcatgacaactttggttttctctc-ttttgattggttaaaaataata 357  Q
    ||||||||||||||||| |||||||||||||||| ||||||||| |||| |||||| ||||||||||    
T  27144088 acaactctttggtacaactttcatgacaactttgattttctctctttttaattggtcaaaaataata 27144022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 315 - 379
Target Start/End: Complemental strand, 2881476 - 2881412
Alignment:
Q  315 tgacaactttggttttctctcttttgattggttaaaaataatagagaaagagagagagagaaaga 379  Q
    ||||||||||| || |||||||| | |||||| |||||||||||||| |||||||||||||||||    
T  2881476 tgacaactttgtttctctctcttcttattggtcaaaaataatagagagagagagagagagaaaga 2881412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 281 - 365
Target Start/End: Complemental strand, 15098915 - 15098831
Alignment:
Q  281 gtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagagaaaga 365  Q
    |||| ||||| |||| | |||||||||| ||  |||||||||||| ||||||||| |||||||| | ||||||||||||||||||    
T  15098915 gtgatatatgtacaattttttggtacaacttctatgacaactttgattttctctcatttgattgataaaaaataatagagaaaga 15098831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 305 - 369
Target Start/End: Complemental strand, 27335017 - 27334953
Alignment:
Q  305 acaattttcatgacaactttggttttctctcttttgattggttaaaaataatagagaaagagaga 369  Q
    |||| ||| |||||||| ||| ||||||||||||| |||||| |||||||||||||| |||||||    
T  27335017 acaactttaatgacaaccttgtttttctctctttttattggtcaaaaataatagagagagagaga 27334953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 305 - 369
Target Start/End: Complemental strand, 27395757 - 27395693
Alignment:
Q  305 acaattttcatgacaactttggttttctctcttttgattggttaaaaataatagagaaagagaga 369  Q
    |||| ||| |||||||| ||| ||||||||||||| |||||| |||||||||||||| |||||||    
T  27395757 acaactttaatgacaaccttgtttttctctctttttattggtcaaaaataatagagagagagaga 27395693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 316 - 361
Target Start/End: Complemental strand, 13658446 - 13658401
Alignment:
Q  316 gacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    |||||||||||||||||||  |||||||||| ||||||||||||||    
T  13658446 gacaactttggttttctcttctttgattggtaaaaaataatagaga 13658401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 354
Target Start/End: Original strand, 8778779 - 8778839
Alignment:
Q  294 aactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaata 354  Q
    |||| |||||||||| ||| |||||||||| | |||||||||||||||||| | |||||||    
T  8778779 aactatttggtacaacttttatgacaacttagattttctctcttttgattgatcaaaaata 8778839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 365
Target Start/End: Complemental strand, 32784891 - 32784831
Alignment:
Q  305 acaattttcatgacaactttggttttctctcttttgattggttaaaaataatagagaaaga 365  Q
    ||||||||  |||||| |||| ||||||||||||||||| || ||||||||| ||||||||    
T  32784891 acaattttggtgacaattttgtttttctctcttttgattagtcaaaaataatggagaaaga 32784831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 361
Target Start/End: Original strand, 28883663 - 28883720
Alignment:
Q  304 tacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    ||||| |||||||||||||||| ||||||||  | |||||||| ||||| ||||||||    
T  28883663 tacaactttcatgacaactttgtttttctcttctatgattggtcaaaaacaatagaga 28883720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 315 - 375
Target Start/End: Complemental strand, 2862215 - 2862155
Alignment:
Q  315 tgacaactttggttttctctcttttgattggttaaaaataatagagaaagagagagagaga 375  Q
    |||||| |||| || ||||| || | |||||| |||||||||||||| |||||||||||||    
T  2862215 tgacaattttgtttctctcttttcttattggtcaaaaataatagagagagagagagagaga 2862155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 315 - 375
Target Start/End: Complemental strand, 3800737 - 3800677
Alignment:
Q  315 tgacaactttggttttctctcttttgattggttaaaaataatagagaaagagagagagaga 375  Q
    ||||||||||  ||||||||||| | ||||||  |||| |||||||| |||||||||||||    
T  3800737 tgacaactttcattttctctcttctcattggtccaaaacaatagagagagagagagagaga 3800677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 305 - 361
Target Start/End: Complemental strand, 17835765 - 17835709
Alignment:
Q  305 acaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    |||| ||| |||||||||||| ||||||||||| | |||||||||||| ||| ||||    
T  17835765 acaactttaatgacaactttgtttttctctcttcttattggttaaaaacaatggaga 17835709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 275 - 361
Target Start/End: Original strand, 11570251 - 11570337
Alignment:
Q  275 agagaagtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    |||| ||||| ||||| |||||||||| |||||| ||||||||||||||| || |||||||||||||||||| ||||||||||||||    
T  11570251 agagtagtgatatatgtacaactctttcgtacaactttcatgacaacttttgtcttctctcttttgattggtcaaaaataatagaga 11570337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 292 - 361
Target Start/End: Original strand, 10302248 - 10302317
Alignment:
Q  292 acaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    ||||||||||||||||| |||||||| ||||||| |||||||||||||||||||| ||||||||||||||    
T  10302248 acaactctttggtacaactttcatgataactttgattttctctcttttgattggtaaaaaataatagaga 10302317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 292 - 361
Target Start/End: Original strand, 32811769 - 32811838
Alignment:
Q  292 acaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    |||||||||| |||||| ||| |||||||||||||||||||||| |||||||||| ||||||||||||||    
T  32811769 acaactctttagtacaactttaatgacaactttggttttctctcatttgattggtcaaaaataatagaga 32811838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 303 - 361
Target Start/End: Original strand, 21728150 - 21728208
Alignment:
Q  303 gtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    |||||| |||||||||||||||| |||| ||||||||||||||| ||||||||||||||    
T  21728150 gtacaactttcatgacaactttgattttatctcttttgattggtcaaaaataatagaga 21728208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 292 - 361
Target Start/End: Complemental strand, 8670238 - 8670169
Alignment:
Q  292 acaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    |||||||||| |||| || || |||| ||||||| |||||| ||||||||||||| ||||||||||||||    
T  8670238 acaactcttttgtacgatctttatgataactttgtttttctatcttttgattggtcaaaaataatagaga 8670169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 292 - 361
Target Start/End: Original strand, 24136825 - 24136894
Alignment:
Q  292 acaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    |||||| ||| |||||||||| ||||||| |||| ||||||||  |||||||||| ||||||||||||||    
T  24136825 acaactttttagtacaatttttatgacaaatttgtttttctcttatttgattggtaaaaaataatagaga 24136894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 292 - 361
Target Start/End: Original strand, 44671941 - 44672010
Alignment:
Q  292 acaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    ||||||||| ||||||| ||| |||| |||||| |||||||||  |||||||||| ||||||||||||||    
T  44671941 acaactcttcggtacaacttttatgataactttagttttctcttctttgattggtcaaaaataatagaga 44672010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 292 - 361
Target Start/End: Complemental strand, 12708262 - 12708193
Alignment:
Q  292 acaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    |||||||||| ||||||  || ||||||| |||| |||| | ||||||||||||| ||||||||||||||    
T  12708262 acaactcttttgtacaacctttatgacaattttgtttttatatcttttgattggtcaaaaataatagaga 12708193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 292 - 361
Target Start/End: Complemental strand, 12717807 - 12717738
Alignment:
Q  292 acaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    |||||||||| ||||||  || ||||||| |||| |||| | ||||||||||||| ||||||||||||||    
T  12717807 acaactcttttgtacaacctttatgacaattttgtttttatatcttttgattggtcaaaaataatagaga 12717738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 292 - 361
Target Start/End: Complemental strand, 42616023 - 42615954
Alignment:
Q  292 acaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    |||||||||| ||  ||| || |||||||||||| |||||| | ||||||||||| ||||||||||||||    
T  42616023 acaactcttttgtttaatatttatgacaactttgtttttctattttttgattggtcaaaaataatagaga 42615954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 292 - 361
Target Start/End: Complemental strand, 51849048 - 51848979
Alignment:
Q  292 acaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    |||||||||||||||||  |  |||||||||||| ||||||||  |||||||||| |||||||| |||||    
T  51849048 acaactctttggtacaacctctatgacaactttgattttctcttatttgattggtcaaaaataacagaga 51848979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 363
Target Start/End: Complemental strand, 7503596 - 7503560
Alignment:
Q  327 ttttctctcttttgattggttaaaaataatagagaaa 363  Q
    ||||||||||||| |||||||||||||||||||||||    
T  7503596 ttttctctcttttcattggttaaaaataatagagaaa 7503560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 361
Target Start/End: Original strand, 35043638 - 35043694
Alignment:
Q  305 acaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    ||||||||||||||||| |   ||||||||||||| |||||||||||||||| ||||    
T  35043638 acaattttcatgacaacctcatttttctctctttttattggttaaaaataatggaga 35043694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 363
Target Start/End: Original strand, 18540984 - 18541031
Alignment:
Q  316 gacaactttggttttctctcttttgattggttaaaaataatagagaaa 363  Q
    |||||||||| ||||||||  |||||||||| ||||||||||||||||    
T  18540984 gacaactttgattttctcttctttgattggtcaaaaataatagagaaa 18541031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 315 - 361
Target Start/End: Original strand, 25302573 - 25302619
Alignment:
Q  315 tgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    ||||||||||  ||||||||||||| |||||||||||| ||||||||    
T  25302573 tgacaactttttttttctctcttttcattggttaaaaacaatagaga 25302619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 299 - 361
Target Start/End: Complemental strand, 40053065 - 40053003
Alignment:
Q  299 tttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    ||||||||||| ||   |||||||||| | ||||||||||| |||||| ||||||||||||||    
T  40053065 tttggtacaatctttgagacaactttgttgttctctcttttcattggtcaaaaataatagaga 40053003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 452 - 482
Target Start/End: Complemental strand, 45042291 - 45042261
Alignment:
Q  452 ttagaaaatagttgtacaaatatcatttctc 482  Q
    |||||||||||||||||||||||||||||||    
T  45042291 ttagaaaatagttgtacaaatatcatttctc 45042261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 361
Target Start/End: Original strand, 950350 - 950419
Alignment:
Q  292 acaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    |||||| ||| | |||| ||| ||| ||| |||| |||||| ||||||||||||| ||||||||||||||    
T  950350 acaacttttttgaacaacttttatgccaattttgtttttctttcttttgattggtcaaaaataatagaga 950419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 352
Target Start/End: Complemental strand, 5383902 - 5383865
Alignment:
Q  315 tgacaactttggttttctctcttttgattggttaaaaa 352  Q
    ||||||||||| ||||||||||||||||||| ||||||    
T  5383902 tgacaactttgtttttctctcttttgattggctaaaaa 5383865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 365
Target Start/End: Complemental strand, 8905882 - 8905821
Alignment:
Q  304 tacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagagaaaga 365  Q
    ||||| |||||| | ||||||| ||||||||  | |||||||| ||||||||||||||||||    
T  8905882 tacaactttcataataactttgtttttctcttctatgattggtcaaaaataatagagaaaga 8905821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 481
Target Start/End: Original strand, 15182624 - 15182653
Alignment:
Q  452 ttagaaaatagttgtacaaatatcatttct 481  Q
    ||||||||||||||||||||||||||||||    
T  15182624 ttagaaaatagttgtacaaatatcatttct 15182653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 456 - 488
Target Start/End: Original strand, 26585218 - 26585250
Alignment:
Q  456 aaaatagttgtacaaatatcatttctcgtaata 488  Q
    ||||||||||||||||||||||||||| |||||    
T  26585218 aaaatagttgtacaaatatcatttctcttaata 26585250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 305 - 361
Target Start/End: Original strand, 50777341 - 50777397
Alignment:
Q  305 acaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    ||||||||  ||||||| ||| ||||||||||| | |||||||||||| ||||||||    
T  50777341 acaattttggtgacaaccttgtttttctctcttcttattggttaaaaacaatagaga 50777397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 280 - 361
Target Start/End: Complemental strand, 92126 - 92045
Alignment:
Q  280 agtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    ||||| ||||| ||||||||||| ||||||||| ||||||| ||| ||||||||||||||||||||| ||||||| ||||||    
T  92126 agtgatatatgtacaactctttgatacaatttttatgacaatttttgttttctctcttttgattggtcaaaaatattagaga 92045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 9e-19; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 275 - 367
Target Start/End: Complemental strand, 4723749 - 4723657
Alignment:
Q  275 agagaagtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagagaaagaga 367  Q
    |||| ||||| ||||| ||||||||||||||||| ||| || |||||||| ||||||||||||||||||||| ||||||| | |||| |||||    
T  4723749 agagcagtgatatatgtacaactctttggtacaacttttataacaactttagttttctctcttttgattggtcaaaaatattggagagagaga 4723657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 286 - 361
Target Start/End: Original strand, 43057562 - 43057637
Alignment:
Q  286 atatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    ||||| ||| ||||||| || || ||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  43057562 atatgtacacctctttgatataactttcatgacaactttagttttctctcttttgattggtcaaaaataatagaga 43057637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 305 - 375
Target Start/End: Complemental strand, 43356471 - 43356401
Alignment:
Q  305 acaattttcatgacaactttggttttctctcttttgattggttaaaaataatagagaaagagagagagaga 375  Q
    |||| |||||||||||||||| |||| ||| ||||||||||| |||| ||||||||| |||||||||||||    
T  43356471 acaactttcatgacaactttgtttttttctattttgattggtcaaaattaatagagagagagagagagaga 43356401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 292 - 361
Target Start/End: Original strand, 41868274 - 41868343
Alignment:
Q  292 acaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    ||||||||||| ||||| ||| | ||||||||||||||||||   |||||||||| ||||||||||||||    
T  41868274 acaactctttgatacaacttttacgacaactttggttttctcatatttgattggtcaaaaataatagaga 41868343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 292 - 361
Target Start/End: Complemental strand, 44059567 - 44059498
Alignment:
Q  292 acaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    |||||| |||||||||| ||   |||||||||||||||||||||  ||||||||| ||||||||||||||    
T  44059567 acaactttttggtacaacttctgtgacaactttggttttctctcaattgattggtcaaaaataatagaga 44059498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 299 - 361
Target Start/End: Complemental strand, 17917548 - 17917486
Alignment:
Q  299 tttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    |||| ||||||||| || |||||||||||||||| | ||||||||||| ||||||| ||||||    
T  17917548 tttgatacaatttttataacaactttggttttcttttttttgattggtcaaaaatattagaga 17917486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 313 - 361
Target Start/End: Original strand, 13466001 - 13466049
Alignment:
Q  313 catgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    ||||||||||||| |||||||| ||||||||||| |||| |||||||||    
T  13466001 catgacaactttgtttttctctattttgattggtcaaaattaatagaga 13466049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 361
Target Start/End: Original strand, 30413650 - 30413706
Alignment:
Q  305 acaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    ||||||||  ||||||||||| |||||||||||||||||||| ||||| ||| ||||    
T  30413650 acaattttggtgacaactttgcttttctctcttttgattggtcaaaaacaatggaga 30413706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 361
Target Start/End: Original strand, 39744512 - 39744568
Alignment:
Q  305 acaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    |||| |||||||||||||||| |||||||| ||||||||||| ||||  ||||||||    
T  39744512 acaactttcatgacaactttgtttttctctattttgattggtcaaaatcaatagaga 39744568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 375
Target Start/End: Complemental strand, 1151671 - 1151612
Alignment:
Q  316 gacaactttggttttctctcttttgattggttaaaaataatagagaaagagagagagaga 375  Q
    |||||||||| | |||||| |||| |||||| ||||| |||||||| |||||||||||||    
T  1151671 gacaactttgttgttctcttttttcattggtcaaaaacaatagagagagagagagagaga 1151612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 361
Target Start/End: Original strand, 6851586 - 6851633
Alignment:
Q  314 atgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    |||||||||||| |||||||||||||||||||| ||||| ||| ||||    
T  6851586 atgacaactttgtttttctctcttttgattggtcaaaaacaattgaga 6851633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 375
Target Start/End: Complemental strand, 35518417 - 35518358
Alignment:
Q  316 gacaactttggttttctctcttttgattggttaaaaataatagagaaagagagagagaga 375  Q
    |||||||||| | ||||||||| | |||||| ||||| |||||||| |||||||||||||    
T  35518417 gacaactttgttgttctctcttcttattggtcaaaaacaatagagagagagagagagaga 35518358  T

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Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 452 - 482
Target Start/End: Complemental strand, 23045123 - 23045093
Alignment:
Q  452 ttagaaaatagttgtacaaatatcatttctc 482  Q
    |||||||||||||||||||||||||||||||    
T  23045123 ttagaaaatagttgtacaaatatcatttctc 23045093  T

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Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 299 - 361
Target Start/End: Original strand, 37827697 - 37827759
Alignment:
Q  299 tttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    ||||||||||| || | |||||||||| | ||||||||||| |||||| |||||||| |||||    
T  37827697 tttggtacaatctttaagacaactttgttgttctctcttttcattggtcaaaaataaaagaga 37827759  T

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Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 271 - 365
Target Start/End: Original strand, 42665696 - 42665790
Alignment:
Q  271 aattagagaagtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagagaaaga 365  Q
    |||||||| ||||| || || |||||  |||||||||| ||| |||||||||||  ||| |||| |||| ||||||  |||| ||||||||||||    
T  42665696 aattagagtagtgatatttgtacaaccatttggtacaactttgatgacaactttcatttgctcttttttcattggtccaaaacaatagagaaaga 42665790  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 377
Target Start/End: Original strand, 9377687 - 9377748
Alignment:
Q  316 gacaactttggttttctctcttttgattggttaaaaataatagagaaagagagagagagaaa 377  Q
    |||||||||| | ||||||||| | |||||| ||||| |||| ||| |||||||||||||||    
T  9377687 gacaactttgttgttctctcttcttattggtcaaaaagaatatagagagagagagagagaaa 9377748  T

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Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 361
Target Start/End: Original strand, 31635739 - 31635784
Alignment:
Q  316 gacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    |||||||||| ||||||||  |||||||||| ||||||||||||||    
T  31635739 gacaactttgattttctcttctttgattggtcaaaaataatagaga 31635784  T

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Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 456 - 484
Target Start/End: Complemental strand, 7428459 - 7428431
Alignment:
Q  456 aaaatagttgtacaaatatcatttctcgt 484  Q
    |||||||||||||||||||||||||||||    
T  7428459 aaaatagttgtacaaatatcatttctcgt 7428431  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 273 - 361
Target Start/End: Original strand, 16051275 - 16051362
Alignment:
Q  273 ttagagaagtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    |||||| ||||| || || ||| || |||||||||| | | |||||||||||  ||| |||| ||||||||||| ||||||||||||||    
T  16051275 ttagagtagtgatatttgtacatctttttggtacaactcttatgacaactttaattt-ctcttttttgattggtcaaaaataatagaga 16051362  T

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Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 327 - 363
Target Start/End: Complemental strand, 32755809 - 32755773
Alignment:
Q  327 ttttctctcttttgattggttaaaaataatagagaaa 363  Q
    |||||||||||||||||||| ||||| ||||||||||    
T  32755809 ttttctctcttttgattggtcaaaaacaatagagaaa 32755773  T

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Target: scaffold0001 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 292 - 361
Target Start/End: Complemental strand, 404914 - 404845
Alignment:
Q  292 acaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    ||||||||||||||||| ||| |||||||||||| ||||||||  || ||||||| | ||||| ||||||    
T  404914 acaactctttggtacaacttttatgacaactttgtttttctcttcttcgattggtcataaatactagaga 404845  T

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Target: scaffold0036 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 275 - 361
Target Start/End: Complemental strand, 18186 - 18101
Alignment:
Q  275 agagaagtgaaatatgcacaactctttggtacaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    |||| ||||| || || |||||| |||| ||||| ||| |||||||||||  ||||||||||||| |||||||||||| ||| ||||    
T  18186 agagtagtgatatttgaacaactatttgatacaacttttatgacaactttt-ttttctctcttttcattggttaaaaacaatggaga 18101  T

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Target: scaffold0054 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 305 - 361
Target Start/End: Original strand, 31518 - 31574
Alignment:
Q  305 acaattttcatgacaactttggttttctctcttttgattggttaaaaataatagaga 361  Q
    ||||||||  ||||||||||  ||||||||||||| |||||||||||| ||| ||||    
T  31518 acaatttttgtgacaactttttttttctctcttttcattggttaaaaacaatggaga 31574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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