View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0846_low_44 (Length: 539)
Name: NF0846_low_44
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_low_44 |
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Alignment Details
Target: chr5 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 101 - 513
Target Start/End: Original strand, 8134991 - 8135406
Alignment:
| Q |
101 |
aggcatgctaatgttggacactaacacatcacccacacatgtacattcaatcgcnnnnnnnnn----cttaaattattagaagtgtatatacgtatttat |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||| |
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| T |
8134991 |
aggcatgctaatgttggacactaacacatcacccacacatgtacattcaatcgctttttttttttctcttaaattattagaagtgtatatgcgtatgtat |
8135090 |
T |
|
| Q |
197 |
caatgttgtgtctgatatatgtgtcgacgtgtcctatgtagctccgaaactttagattgaaaacgtgtctagcatccgatatgacaccaaaacatgttgt |
296 |
Q |
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|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
8135091 |
caatgttgtgtctgatatacgtgtcgacgtgtcctatgtagctccgaaactttagattgaagacgtgtctagcatccgatatgacaccaaaacatgttgt |
8135190 |
T |
|
| Q |
297 |
tacattcaattagttctatttttaatattacattgtcggtatgttagtatcgtgtaccgcgtgatgaatatttcacaatcttctgcagttcatctttctt |
396 |
Q |
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|||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8135191 |
tacattcaattagttctatttttaatattatagtgtcggcatgttagtatcgtgtaccgcgtgatgaatatttcacaatcttctgcagttcatctttctt |
8135290 |
T |
|
| Q |
397 |
gtctaatatcattgatttgattagatatagtaagtcctgacttattgataaaacatgcatgtgagtgctgtaggcctagtgtgccaattgcaacagggtg |
496 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8135291 |
gtctaatatcattga-ttgattagatatagtaagtcctgacttattgataaaacatgcatgtgagtgctgtaggcctagtgtgccaattgcaacagggtg |
8135389 |
T |
|
| Q |
497 |
atttttatattgttgga |
513 |
Q |
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||||||||| ||||||| |
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| T |
8135390 |
atttttataatgttgga |
8135406 |
T |
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