View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0846_low_47 (Length: 534)
Name: NF0846_low_47
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_low_47 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 463; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 9 - 505
Target Start/End: Complemental strand, 9822399 - 9821899
Alignment:
| Q |
9 |
agcagagacaccaggcccgacgctgacatgttaaaatttgaaaaaatgaattaatcgaatgtatcacatatgtccatgtcctgccagttccatctgaagt |
108 |
Q |
| |
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|||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9822399 |
agcacagacaccaggcccgacactgacatgttaaaatttgaaaaaatgaattaatcgaatgtatcacatatgtccatgtcctgccagttccatctgaagt |
9822300 |
T |
|
| Q |
109 |
gtcggtgttacagtgatttatattcaacattcaggcaatggttctaaattgcaatcagcaacagcaatattaaaagttttagatatctactcaacagcat |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
9822299 |
gtcggtgttacagtgatttatattcaacattcaggcaatggttctaaattgcaatcagcaacagcaatattaaaagttttagatatctactcaatagcat |
9822200 |
T |
|
| Q |
209 |
tgcagcttcggtctcatcggccacaatttg-cacaatatcatgattcaaggagtaaccatgaccgcaatatcatgattcacagagtaaagtgatcgcaat |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9822199 |
tgcagcttcggtctcatcggccacaatttgccacaatatcatgattcaaggagtaaccatgaccgcaatatcatgattcacagagtaaagtgatcgcaat |
9822100 |
T |
|
| Q |
308 |
ttagacccatgacttgtcaagaatacaaacaatgcattatgaacaatcctctatgaattgaatccaaatgcaacaacaagccgaagaacttatacaatgt |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9822099 |
ttagacccatgacttgtcaagaatacaaacaatgcattatgaacaatcctctatgaattgaatccaaatgcaacaacaagccgaagaacttatacaatgt |
9822000 |
T |
|
| Q |
408 |
ttaatttgaaaaatcaatcaat---aaaattacaactaggtaaaccattcatataaaatccaaaattcaatttaagagacaaaaatcctgaacattcaaa |
504 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9821999 |
ttaatttgaaaaatcaatcaataaaaaaattacaactaggtaaaccattcatagaaaatccaaaattcaatttaagagacaaaaatcctgaacattcaaa |
9821900 |
T |
|
| Q |
505 |
a |
505 |
Q |
| |
|
| |
|
|
| T |
9821899 |
a |
9821899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 9 - 505
Target Start/End: Original strand, 6275091 - 6275586
Alignment:
| Q |
9 |
agcagagacaccaggcccgacgctgacatgttaaaatttgaaaaaatgaattaatcgaatgtatcacatatgtccatgtcctgccagttccatctgaagt |
108 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
6275091 |
agcacagacaccaggcccgacactgacatgttaaaatttgaaaaaatgaattaatcgaatgtatcac------ccatgtcctgccagttccatctgaagt |
6275184 |
T |
|
| Q |
109 |
gtcggtgttacagtgatttatattcaacattcaggcaatggttctaaattgcaatcagcaacagcaatattaaaagttttagatatctactcaacagcat |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6275185 |
gtcggtgttacagtgatttatattcaacattcaggcaatggttctaaattgcaatcagcaacagcaatattaaaagttttagatatctactcaacagcat |
6275284 |
T |
|
| Q |
209 |
tgcagcttcggtctcatcggccacaatttg-cacaatatcatgattcaaggagtaaccatgaccgcaatatcatgattcacagagtaa-agtgatcgcaa |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
6275285 |
tgcagcttcggtctcatcggccacaatttgccacaatatcatgattcaaggagtaaccatgaccgcaatatcatgattcacagagtaaccgtgatcgcaa |
6275384 |
T |
|
| Q |
307 |
tttagacccatgacttgtcaagaatacaaacaatgcattatgaacaatcctctatgaattgaatccaaatg---caacaacaagccgaagaacttataca |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
6275385 |
tttagacccatgacttgtcaagaatacaaacagtgcatcatgaacaatcctctatgaattgaatccaaatgcaccaacaacaagccgaagaacttataca |
6275484 |
T |
|
| Q |
404 |
atgtttaatttgaaaaatcaatcaataaaattacaactaggtaaaccattcatataaaatccaaaattcaatttaagagacaaaaatcctgaacattcaa |
503 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
6275485 |
atgtttaattcgaaaaatcaatcaataaaattacaactaggtaaaccattcatagaaaatccaaaaatcaatttaagagacaaaaatcctgaacattcaa |
6275584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 38 - 155
Target Start/End: Complemental strand, 9823007 - 9822890
Alignment:
| Q |
38 |
gttaaaatttgaaaaaatgaattaatcgaatgtatcacatatgtccatgtcctgccagttccatctgaagtgtcggtgttacagtgatttatattcaaca |
137 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||||||||| | ||||||||| ||||||| |||||||||||| |||| || ||| ||||||| | |
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|
| T |
9823007 |
gttaaaacttgaaaaaatgaattaattgaatgtatcacatatggctgtgtcctgccggttccattagaagtgtcggtgctacaatggtttctattcaata |
9822908 |
T |
|
| Q |
138 |
ttcaggcaatggttctaa |
155 |
Q |
| |
|
|||| |||||| |||||| |
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|
| T |
9822907 |
ttcaagcaatgattctaa |
9822890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 38 - 155
Target Start/End: Original strand, 6273846 - 6273963
Alignment:
| Q |
38 |
gttaaaatttgaaaaaatgaattaatcgaatgtatcacatatgtccatgtcctgccagttccatctgaagtgtcggtgttacagtgatttatattcaaca |
137 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||||||||| ||||||||| ||||||| |||||||||||| || | || ||| ||||||| | |
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|
| T |
6273846 |
gttaaaacttgaaaaaatgaattaattgaatgtatcacatatggttgtgtcctgccggttccattagaagtgtcggtgctaaaatggtttctattcaata |
6273945 |
T |
|
| Q |
138 |
ttcaggcaatggttctaa |
155 |
Q |
| |
|
|||| || ||| |||||| |
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|
| T |
6273946 |
ttcaagcgatgattctaa |
6273963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 38 - 155
Target Start/End: Original strand, 6274488 - 6274605
Alignment:
| Q |
38 |
gttaaaatttgaaaaaatgaattaatcgaatgtatcacatatgtccatgtcctgccagttccatctgaagtgtcggtgttacagtgatttatattcaaca |
137 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||| |||||| ||||||||| ||||||| |||||||||||| || | || ||| ||||||| | |
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|
| T |
6274488 |
gttaaaacttgaaaaaatgaattaattgaatgtatcgcatatggttgtgtcctgccggttccattagaagtgtcggtgctataatggtttctattcaata |
6274587 |
T |
|
| Q |
138 |
ttcaggcaatggttctaa |
155 |
Q |
| |
|
|||| || ||| |||||| |
|
|
| T |
6274588 |
ttcaagcgatgattctaa |
6274605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 105 - 276
Target Start/End: Complemental strand, 35679287 - 35679113
Alignment:
| Q |
105 |
aagtgtcggtgttacagtgatttatattcaaca---ttcaggcaatggttctaaattgcaatcagcaacagcaatattaaaagttttagatatctactca |
201 |
Q |
| |
|
||||||||||| || |||||||| ||||||||| |||| || |||||||||||||||||||| ||||||||||| |||| ||||||||||||||||| |
|
|
| T |
35679287 |
aagtgtcggtgctatagtgatttctattcaacaacattcaagctatggttctaaattgcaatcaacaacagcaata-taaattttttagatatctactca |
35679189 |
T |
|
| Q |
202 |
acagcattgcagcttcggtctcatcggccacaatttg-cacaatatcatgattcaaggagtaaccatgaccgcaat |
276 |
Q |
| |
|
|| |||||| | || | |||||||| ||||||||||| | |||||||||||||||| | |||||| |||||||||| |
|
|
| T |
35679188 |
acggcattgtaactacagtctcatctgccacaatttgccgcaatatcatgattcaaagggtaaccgtgaccgcaat |
35679113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 381 - 493
Target Start/End: Complemental strand, 35679074 - 35678963
Alignment:
| Q |
381 |
caacaagccgaagaacttatacaatgtttaatttgaaaaatcaatcaataaaattacaactaggtaaaccattcatataaaatccaaaattcaatttaag |
480 |
Q |
| |
|
|||||||| ||||||||||||||| |||| || ||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
35679074 |
caacaagctgaagaacttatacaa-cattaacttagaaaatcaatcaataaaagtataactaggtaaaccattcatagaaaatccaaaattcaatttaag |
35678976 |
T |
|
| Q |
481 |
agacaaaaatcct |
493 |
Q |
| |
|
||||||||||||| |
|
|
| T |
35678975 |
agacaaaaatcct |
35678963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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