View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0846_low_50 (Length: 517)
Name: NF0846_low_50
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_low_50 |
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Alignment Details
Target: chr3 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 460
Target Start/End: Original strand, 30668374 - 30668813
Alignment:
| Q |
1 |
gagtttcttaccacacaagacttggataggactcatctcatctcatctttattctaaatattcaagcattggttactctcattttacactaaaaattaaa |
100 |
Q |
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| T |
30668374 |
gagtttcttaccacacaagacttggataggactcatctcatctcatctttattctaaatattcaagcattggttactctcattttacactaaaaattaaa |
30668473 |
T |
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| Q |
101 |
acatcaatgtcttttattggtgagtgaccaatcataatattgctattttaaactgatcattatcatttctattttcaacctatcatattggtctttcaat |
200 |
Q |
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| T |
30668474 |
acatcaatgtcttttattggtgagtgaccaatcataatattgctattttaaactgatcattatc--------------------atattggtctttcaat |
30668553 |
T |
|
| Q |
201 |
ttagattacattattattacatacaaacctatcattttatttcgcattagtcacccaattattttatttctgtaaattaatttggaaaattcaagataat |
300 |
Q |
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| T |
30668554 |
ttagattacattattattacatacaaacctatcattttatttcgcattagtcacccaattattttatttctgtaaattaatttggaaaattcaagataat |
30668653 |
T |
|
| Q |
301 |
ttcataatttaaagggattggacccatcagttaatgtcactattacattttgcatgttggcctaggaactcataactttcatcatactgcaattatagga |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
30668654 |
ttcataatttaaagggattggacccatcagttaatgtcactgttacattttgcatgttggcctaggaactcataactttcatcatactgcaattaaagga |
30668753 |
T |
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| Q |
401 |
aattcagaactttcctactttcttcactgatatgcttcacaataatgtcactttattagg |
460 |
Q |
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| T |
30668754 |
aattcagaactttcctactttcttcactgatatgcttcacaataatgtcactttattagg |
30668813 |
T |
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