View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0846_low_53 (Length: 514)
Name: NF0846_low_53
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_low_53 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 29 - 325
Target Start/End: Complemental strand, 1217735 - 1217439
Alignment:
| Q |
29 |
actttccttgtcccatgacccactcttacacttagacaatcatgcagtcaaatagttgacacctcaaagtcgttggatcaagatcagacactttacatta |
128 |
Q |
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| T |
1217735 |
actttccttgtcccatgacccactcttacacttagataatcatgcagtcaaatagttgacacctcagagtcgttggatcaagatcagacactttacatta |
1217636 |
T |
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| Q |
129 |
taagtttgataaatatatatgtccaataaggatcaaccgcttagattatcaactgcataaatgcatgatcccatgaaattcattttccaaatttcacata |
228 |
Q |
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| T |
1217635 |
taaatttgataaatatatatgtccaataaggatcaaccgtttagattatcaactgcataaatgcatgaccgcatgaaattcattttccaaatttcacata |
1217536 |
T |
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| Q |
229 |
gaagattagatctcgagtcacaaaatattgtagtcgcccattattgactgttagatgaagatgatcagacaatttgtattttagcttctatgatctt |
325 |
Q |
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| T |
1217535 |
gaagattagatctcgagttacaaaatgttgtagtcgcccatcattgactgttagatgaagatgatcagacaatttgtattttagcttctatgatctt |
1217439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 310 - 501
Target Start/End: Complemental strand, 1217098 - 1216907
Alignment:
| Q |
310 |
tagcttctatgatcttatttacaataaaacttaaaaatcataagtgtcactaacatggtatgtgacacaaatggtagatagctgagtatgtcaattattt |
409 |
Q |
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| T |
1217098 |
tagcttctatgatcttatttacaataaaacttaaaaatcataagtgtcactaacatggtatgtgacacaaatggtagatagctgagtatgtcaattattt |
1216999 |
T |
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| Q |
410 |
ggtcaaatgttcaactatggatagtcgatcatttaaacaactctgagttatctcgagaaattagtttatgcaattacatgtgattgatgcct |
501 |
Q |
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| T |
1216998 |
ggtcaaatgttcaactatggataatcgatcatttaaacaactctaggttatctcgagaaattagtttatgcaattacatgtgattgatgcct |
1216907 |
T |
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