View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0846_low_59 (Length: 482)
Name: NF0846_low_59
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_low_59 |
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Alignment Details
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 32 - 450
Target Start/End: Complemental strand, 23081779 - 23081344
Alignment:
| Q |
32 |
cacaatcgttcatatgggttcgacgaaatttatataacacctacatagtttgatgaaactcataaaagcgtgttaaaatgcatgtgctatagggattggg |
131 |
Q |
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| T |
23081779 |
cacaatcattcatatgggttcgacgaaatttatataacacctacatagtttgatgaaactcataaaagtgtgttaaaatgcatgtgctatagggattggg |
23081680 |
T |
|
| Q |
132 |
atttcctgctgtcacagctggatgctgtaacagatcaggaccgttcattttagattaacggttgagataatttaattgtgttaaactgcagttta----- |
226 |
Q |
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|||||||||||| ||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||| |||| |||||||||||| ||||| |
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| T |
23081679 |
atttcctgctgttacagcaggatgctgtaagagatcaggaccgttcattttagatcaacggttgagataaattaactgtgttaaactgttgtttaatcta |
23081580 |
T |
|
| Q |
227 |
---------ttctcatatcaa---cggctaggatttattaccatgtgaaactgcggccatttctacagcaccaaatctcaatctgtgttatagagtgtat |
314 |
Q |
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| T |
23081579 |
aaccgtccgttctcatatcaatggcggctaggatttattaccgcgtgaaactgcggccatttctacagcaccaaatcccaatctgtgttatagagtgtat |
23081480 |
T |
|
| Q |
315 |
ttctagcatgtcttaaataaatgtttaccgcagcattctcgaaaaggatggtcatcacagctccaggtgccacaacattagcacgaatattatcctttgc |
414 |
Q |
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||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23081479 |
ttctagcattttttaaataaatgtttaccgcagcattctcgaaaaggatggtcatcacagctccaggtgccacaacattagcacgaatattatcctttgc |
23081380 |
T |
|
| Q |
415 |
ccattccaatgctaagttcttggcgcattgattcat |
450 |
Q |
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| T |
23081379 |
ccattccaatgctaagttcttggcgcattgattcat |
23081344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 346 - 450
Target Start/End: Complemental strand, 23092638 - 23092534
Alignment:
| Q |
346 |
agcattctcgaaaaggatggtcatcacagctccaggtgccacaacattagcacgaatattatcctttgcccattccaatgctaagttcttggcgcattga |
445 |
Q |
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||||||||| ||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
23092638 |
agcattctccaaaagtaaggtcatcacaggtccaggtgccacaacattagcacgaatattatcctttgcccattccaatgctaagttcttggtacattga |
23092539 |
T |
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| Q |
446 |
ttcat |
450 |
Q |
| |
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||||| |
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| T |
23092538 |
ttcat |
23092534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 371 - 449
Target Start/End: Complemental strand, 23026792 - 23026714
Alignment:
| Q |
371 |
acagctccaggtgccacaacattagcacgaatattatcctttgcccattccaatgctaagttcttggcgcattgattca |
449 |
Q |
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|||| ||||||||||||| |||| |||||||||||||||||||||||||| ||||| |||||||| | | ||||||||| |
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| T |
23026792 |
acaggtccaggtgccacagcatttgcacgaatattatcctttgcccattctaatgccaagttctttgtgaattgattca |
23026714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 371 - 449
Target Start/End: Complemental strand, 23037189 - 23037111
Alignment:
| Q |
371 |
acagctccaggtgccacaacattagcacgaatattatcctttgcccattccaatgctaagttcttggcgcattgattca |
449 |
Q |
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|||| ||||||||||||| |||| |||||||||||||| ||||||||||||||||| |||||||| | | ||||||||| |
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| T |
23037189 |
acaggtccaggtgccacagcatttgcacgaatattatcttttgcccattccaatgccaagttcttcgtgaattgattca |
23037111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 371 - 437
Target Start/End: Complemental strand, 23058145 - 23058079
Alignment:
| Q |
371 |
acagctccaggtgccacaacattagcacgaatattatcctttgcccattccaatgctaagttcttgg |
437 |
Q |
| |
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|||| |||||||||||||||||| || ||||||||||||||||||||||||||||||| ||| |||| |
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| T |
23058145 |
acaggtccaggtgccacaacatttgctcgaatattatcctttgcccattccaatgctatgtttttgg |
23058079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 363 - 447
Target Start/End: Complemental strand, 23069493 - 23069409
Alignment:
| Q |
363 |
tggtcatcacagctccaggtgccacaacattagcacgaatattatcctttgcccattccaatgctaagttcttggcgcattgatt |
447 |
Q |
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||||||| || || |||||||| |||||||| |||||||||||||| ||| | |||||||||||| |||||||| ||||||||| |
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| T |
23069493 |
tggtcattactgccccaggtgcaacaacatttgcacgaatattatcttttccatattccaatgctatgttcttggtgcattgatt |
23069409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 128 - 291
Target Start/End: Complemental strand, 2958000 - 2957823
Alignment:
| Q |
128 |
tgggatttcctgctgtcacagctggatgctgtaacagatcaggaccgttcattttagattaacggttgagataatttaattgtgttaaactgcagttta- |
226 |
Q |
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|||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||| ||||||||| ||||| |
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| T |
2958000 |
tgggatttcctgctgttacagcatgatgctgtaacagatcaggtccgttcattttagatcaacggttgagataatttaactgttttaaactgctgtttaa |
2957901 |
T |
|
| Q |
227 |
-------------ttctcatatcaacggctaggatttattaccatgtgaaactgcggccatttctacagcaccaaatc |
291 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
2957900 |
tctgaaccgtccgttctcatatcaacggctaggatttattaccgcgtgaaactgcggcgatttctacagcaccaaatc |
2957823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 124 - 226
Target Start/End: Original strand, 32182930 - 32183032
Alignment:
| Q |
124 |
ggattgggatttcctgctgtc-acagctggatgctgtaacagatcaggaccgttcattttagattaacggttgagataatttaattgtgttaaactgcag |
222 |
Q |
| |
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|||| ||||||||||||||| ||||| |||| |||||||| |||||| |||| | ||||||| |||||||||||| |||||| ||||||||||||| | |
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| T |
32182930 |
ggatagggatttcctgctgtttacagcaggat-ctgtaacaaatcagggccgtccgatttagatcaacggttgagattatttaactgtgttaaactgctg |
32183028 |
T |
|
| Q |
223 |
ttta |
226 |
Q |
| |
|
|||| |
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|
| T |
32183029 |
ttta |
32183032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 130 - 171
Target Start/End: Original strand, 28850929 - 28850970
Alignment:
| Q |
130 |
ggatttcctgctgtcacagctggatgctgtaacagatcagga |
171 |
Q |
| |
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|||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
28850929 |
ggatttcctgctgttacagcaggatgctgtaacagatcagga |
28850970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 154 - 219
Target Start/End: Complemental strand, 45519959 - 45519894
Alignment:
| Q |
154 |
tgctgtaacagatcaggaccgttcattttagattaacggttgagataatttaattgtgttaaactg |
219 |
Q |
| |
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|||||||| |||| ||||||||||| ||||||||||||| | | || ||| ||||||||||||||| |
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| T |
45519959 |
tgctgtaatagatgaggaccgttcaatttagattaacggctaaaatcattcaattgtgttaaactg |
45519894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 121 - 170
Target Start/End: Complemental strand, 27647121 - 27647072
Alignment:
| Q |
121 |
tagggattgggatttcctgctgtcacagctggatgctgtaacagatcagg |
170 |
Q |
| |
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|||||||| |||||||||||||| | ||| |||||||||||||||||||| |
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| T |
27647121 |
tagggatttggatttcctgctgttatagcaggatgctgtaacagatcagg |
27647072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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