View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0846_low_60 (Length: 480)
Name: NF0846_low_60
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_low_60 |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 42 - 467
Target Start/End: Original strand, 40056812 - 40057227
Alignment:
| Q |
42 |
gcaacggtgttaacaagtaagggatgtgtttgtctatttcatgagaattcgaaggagataagtgtaagttttaaaactataggagatcctggtgtcattt |
141 |
Q |
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| T |
40056812 |
gcaacggtgttaacaagtaagggatgtgtttgtctatttcatgagaattcgaaggagataagtgtaagtttttaaactataggagatcttggtgtcattt |
40056911 |
T |
|
| Q |
142 |
tcataaatcttagaggaagtgaatgcaannnnnnnctgaaataaaaatttccaacagagttaactgttgttggttgtcggcggctgtagttaactgtcgt |
241 |
Q |
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| T |
40056912 |
tcataaatcttagaggaagtgaatgcaa-ttttttctgaaataaaaatttccaacagagttaactgttgttggttgtcggcgtttgtagttaactgtcgt |
40057010 |
T |
|
| Q |
242 |
ataggacttaat-nnnnnnnnttgtcgtttgaggtgttttggtcttttcagatgatttggagaaaaaatgaaagcgtaaagagtaatttttcaacctatt |
340 |
Q |
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| T |
40057011 |
agaggacttagtaaaaaaaaatagccatttgaggtgttttggtcttttcagatgatttggagaaaaaatgagagcgtaaagagtaatttttcaacctatt |
40057110 |
T |
|
| Q |
341 |
gaccacattacgtagcacagttcaagcccaaacaaaatatttatcatttgttagtannnnnnnnnnnnnngtggtggccggggtttgaatctgtcagtaa |
440 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |
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| T |
40057111 |
gacc-----acgtagcacagttcaagcccaaacaaaatatttatcatttgttagta-----attttttttgtggtggccggggtttgaatctatcagtaa |
40057200 |
T |
|
| Q |
441 |
ttctgaatatatttatctataccacct |
467 |
Q |
| |
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| T |
40057201 |
ttctgaatatatttatctataccacct |
40057227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 44 - 88
Target Start/End: Complemental strand, 1300096 - 1300052
Alignment:
| Q |
44 |
aacggtgttaacaagtaagggatgtgtttgtctatttcatgagaa |
88 |
Q |
| |
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| T |
1300096 |
aacggtgttaataaggaagggaggtgtttgtctatttcattagaa |
1300052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 48 - 120
Target Start/End: Complemental strand, 35145693 - 35145621
Alignment:
| Q |
48 |
gtgttaacaagtaagggatgtgtttgtctatttcatgagaattcgaaggagataagtgtaagttttaaaacta |
120 |
Q |
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||||||||||||||||||||||||||||||||| ||||||| |||| |||| | ||||||||||||||||||| |
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| T |
35145693 |
gtgttaacaagtaagggatgtgtttgtctattttatgagaactcgagggaggttagtgtaagttttaaaacta |
35145621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 44 - 145
Target Start/End: Complemental strand, 39484461 - 39484360
Alignment:
| Q |
44 |
aacggtgttaacaagtaagggatgtgtttgtctatttcatgagaattcgaaggagataagtgtaagttttaaaactataggagatcctggtgtcattttc |
143 |
Q |
| |
|
||||||||||| || |||||||||||||| | ||||||||||||| | || |||| |||||||||||||||||| || || ||| ||||||||||||| |
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| T |
39484461 |
aacggtgttaataaataagggatgtgtttatatatttcatgagaacttgagggaggtaagtgtaagttttaaaattagtggggatattggtgtcattttc |
39484362 |
T |
|
| Q |
144 |
at |
145 |
Q |
| |
|
|| |
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|
| T |
39484361 |
at |
39484360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 15239352 - 15239313
Alignment:
| Q |
7 |
ctaatgttgtgatgtttgttttgagtgcttctccggcaac |
46 |
Q |
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| T |
15239352 |
ctaatgttgtgatgtttgttttgagtgcttctccggcaac |
15239313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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