View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0846_low_65 (Length: 467)

Name: NF0846_low_65
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0846_low_65
NF0846_low_65
[»] chr7 (1 HSPs)
chr7 (28-316)||(19808509-19808795)
[»] chr1 (2 HSPs)
chr1 (32-198)||(15156766-15156933)
chr1 (329-408)||(15157499-15157578)
[»] chr8 (3 HSPs)
chr8 (32-198)||(25555605-25555763)
chr8 (329-405)||(25548553-25548629)
chr8 (32-100)||(25549308-25549376)
[»] chr3 (2 HSPs)
chr3 (32-198)||(20011066-20011224)
chr3 (329-405)||(20011907-20011983)
[»] chr6 (3 HSPs)
chr6 (32-198)||(22621179-22621337)
chr6 (335-408)||(34335278-34335351)
chr6 (329-405)||(22622022-22622098)
[»] chr2 (1 HSPs)
chr2 (335-408)||(8998958-8999031)


Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 28 - 316
Target Start/End: Original strand, 19808509 - 19808795
Alignment:
Q  28 cagttattgtgtgcagttattttctagaatgtgtgtattctgttatataaataaagaaaagtcagacttaatagttatcttagaattattgtgtggttca 127  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  19808509 cagttattgtgtgcagttattttctagaatgtg--tattctgttatataaataaagaatagtcagacttaatagttatcttagaattattgtgtggttca 19808606  T
Q  128 ttagaaaaggagagacacaatgctctcgaaaccttgtgagtgtgtactgtgaatatttctgtgtgatttcaattctatacaagtgtgtgattgtatattt 227  Q
    || ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||    
T  19808607 ttggaaaaggagagacacaaggctctcggaaccttgtgagtgtgtactgtgaatatttctgtgtaatttcaattcattacaagtgtgtgattgtatattt 19808706  T
Q  228 atctctgattagggaacctttccccagagaatattcaataataaacaataatattcagttatttatcctattggtaccagtttctatca 316  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  19808707 atctctgattaggaaacctttccccagagaatattcaataataaacaataatattcagttgtttatcctattggtaccagtttctatca 19808795  T

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Target: chr1 (Bit Score: 144; Significance: 2e-75; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 32 - 198
Target Start/End: Complemental strand, 15156933 - 15156766
Alignment:
Q  32 tattgtgtgcagttattttcta-gaatgtgtgtattctgttatataaataaagaaaagtcagacttaatagttatcttagaattattgtgtggttcatta 130  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15156933 tattgtgtgctgttattttctaagaatgtgtgtattctgttatataaataaagaaaagtcagacttaatagttatcttagaattattgtgtggttcatta 15156834  T
Q  131 gaaaaggagagacacaatgctctcgaaaccttgtgagtgtgtactgtgaatatttctgtgtgatttca 198  Q
    | ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  15156833 ggaaaggagagacacaaggctcttgaaaccttgtgagtgtgtactgtgaatatttctgtgtgatttca 15156766  T

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Target: chr1; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 329 - 408
Target Start/End: Original strand, 15157499 - 15157578
Alignment:
Q  329 agtaagaaaatataacaacataatatggtaggtttcggctgaagcattctgcctccaataaaaaactactccaaaagcaa 408  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15157499 agtaagaaaacataacaacataatatggtaggtttcggctgaagcattctgcctccaataaaaaactactccaaaagcaa 15157578  T

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Target: chr8 (Bit Score: 106; Significance: 7e-53; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 32 - 198
Target Start/End: Original strand, 25555605 - 25555763
Alignment:
Q  32 tattgtgtgcagttattttctagaatgtgtgtattctgttatataaataaagaaaagtcagacttaatagttatcttagaattattgtgtggttcattag 131  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||        ||||| ||||||||| |||||||    
T  25555605 tattgtgtgctgttattttatagaatgtgtgtattctgttatataaataaagaaaagtcagacttaata--------agaatcattgtgtggctcattag 25555696  T
Q  132 aaaaggagagacacaatgctctcgaaaccttgtgagtgtgtactgtgaatatttctgtgtgatttca 198  Q
     ||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  25555697 gaaaggagagacacaaggatcttgaaaccttgtgagtgtgtactgtgaatatttctgtgtgatttca 25555763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 329 - 405
Target Start/End: Complemental strand, 25548629 - 25548553
Alignment:
Q  329 agtaagaaaatataacaacataatatggtaggtttcggctgaagcattctgcctccaataaaaaactactccaaaag 405  Q
    |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||    
T  25548629 agtaagaaaacataacaacataataaggtaggtttcggctgaagcattctgcctccaaaaacaaactactccaaaag 25548553  T

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Target: chr8; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 32 - 100
Target Start/End: Original strand, 25549308 - 25549376
Alignment:
Q  32 tattgtgtgcagttattttctagaatgtgtgtattctgttatataaataaagaaaagtcagacttaata 100  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  25549308 tattgtgtgctgttattttatagaatgtgtgtattctgttatataaataaagaaaagtcagacttaata 25549376  T

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Target: chr3 (Bit Score: 106; Significance: 7e-53; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 32 - 198
Target Start/End: Complemental strand, 20011224 - 20011066
Alignment:
Q  32 tattgtgtgcagttattttctagaatgtgtgtattctgttatataaataaagaaaagtcagacttaatagttatcttagaattattgtgtggttcattag 131  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||        ||||| ||||||||| |||||||    
T  20011224 tattgtgtgctgttattttatagaatgtgtgtattctgttatataaataaagaaaagtcagacttaata--------agaatcattgtgtggctcattag 20011133  T
Q  132 aaaaggagagacacaatgctctcgaaaccttgtgagtgtgtactgtgaatatttctgtgtgatttca 198  Q
     |||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  20011132 gaaaggaaagacacaaggctcttgaaaccttgtgagtgtgtactgtgaatatttctgtgtgatttca 20011066  T

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Target: chr3; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 329 - 405
Target Start/End: Original strand, 20011907 - 20011983
Alignment:
Q  329 agtaagaaaatataacaacataatatggtaggtttcggctgaagcattctgcctccaataaaaaactactccaaaag 405  Q
    |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20011907 agtaagaaaacataacaacataataaggtaggtttcggctgaagcattctgcctccaataaaaaactactccaaaag 20011983  T

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Target: chr6 (Bit Score: 102; Significance: 2e-50; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 32 - 198
Target Start/End: Complemental strand, 22621337 - 22621179
Alignment:
Q  32 tattgtgtgcagttattttctagaatgtgtgtattctgttatataaataaagaaaagtcagacttaatagttatcttagaattattgtgtggttcattag 131  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||        ||||| ||||||||| |||||||    
T  22621337 tattgtgtgctgttattttatagaatgtgtgtattctgttatataaataaagaaaagtcagacttaata--------agaatcattgtgtggctcattag 22621246  T
Q  132 aaaaggagagacacaatgctctcgaaaccttgtgagtgtgtactgtgaatatttctgtgtgatttca 198  Q
     ||||||||||||||| | ||| |||||||||||||| |||||||||||||||||||||||||||||    
T  22621245 gaaaggagagacacaaggttcttgaaaccttgtgagtatgtactgtgaatatttctgtgtgatttca 22621179  T

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Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 335 - 408
Target Start/End: Original strand, 34335278 - 34335351
Alignment:
Q  335 aaaatataacaacataatatggtaggtttcggctgaagcattctgcctccaataaaaaactactccaaaagcaa 408  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34335278 aaaacataacaacataatatggtaggtttcggctgaagcattctgcctccaataaaaaactactccaaaagcaa 34335351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 329 - 405
Target Start/End: Original strand, 22622022 - 22622098
Alignment:
Q  329 agtaagaaaatataacaacataatatggtaggtttcggctgaagcattctgcctccaataaaaaactactccaaaag 405  Q
    |||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  22622022 agtaagaaaacataacaacataataaggtaggttccggctgaagcattctgcctccaataaaaatctactccaaaag 22622098  T

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Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 335 - 408
Target Start/End: Complemental strand, 8999031 - 8998958
Alignment:
Q  335 aaaatataacaacataatatggtaggtttcggctgaagcattctgcctccaataaaaaactactccaaaagcaa 408  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8999031 aaaacataacaacataatatggtaggtttcggctgaagcattctgcctccaataaaaaactactccaaaagcaa 8998958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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