View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0846_low_67 (Length: 463)
Name: NF0846_low_67
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_low_67 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 405; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 18 - 450
Target Start/End: Complemental strand, 32990014 - 32989582
Alignment:
| Q |
18 |
cacgcgacgctgggacctctgatcaatggatcaaacggaacacctcaatgctccgtctgacaggaaaacaccccttcaactcagagccaccacttcaaga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32990014 |
cacgcgacgctgggacctctgatcaatggatcaaacggaacacctcaatgctccgtctgacaggaaaacaccccttcaactcagagccaccacttcaaga |
32989915 |
T |
|
| Q |
118 |
actagtagaacatggtttcattacacctgtcccactccactatgtccgtaaccacggacctgtcccaaaagcacaatgggatagttggaccatcgaagta |
217 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32989914 |
actagtagaacatggttttattacacctgtcccactccactatgtccgtaaccacggacctgtcccaaaagcacaatgggatagttggaccatcgaagta |
32989815 |
T |
|
| Q |
218 |
tcaggtttggtcaaaaacccgacccaattcacgatggcccaactaatcgacgacttcccaagtcatgaattccctgttacccttgtatgcgcgggtaacc |
317 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32989814 |
tcaggtctggtcaaaaacccgacccaattcacgatggcccaactaatcgacgacttcccaagtcatgaattccctgttacccttgtatgcgcgggtaacc |
32989715 |
T |
|
| Q |
318 |
ggcgcaaggaacagaacatgataaaacaaagcattggtttcaactggggtgcagctggtatctccacttcagtatggcgcggtgtaccattgtgcaccgt |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
32989714 |
ggcgcaaggaacagaacatgataaaacaaagcattggtttcaactggggtgcagctggtatctccacttcagtatggcgtggtgtaccactgtgcaccgt |
32989615 |
T |
|
| Q |
418 |
gcttaagagttgtggcatcttgaaccgcaacag |
450 |
Q |
| |
|
|| ||||||||||||||||||||||| ||||| |
|
|
| T |
32989614 |
actcaagagttgtggcatcttgaaccgtaacag |
32989582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 149 - 432
Target Start/End: Complemental strand, 32962220 - 32961937
Alignment:
| Q |
149 |
ccactccactatgtccgtaaccacggacctgtcccaaaagcacaatgggatagttggaccatcgaagtatcaggtttggtcaaaaacccgacccaattca |
248 |
Q |
| |
|
|||||||||||||| ||||| ||||||| ||| || |||||| |||||| |||| ||||||||||| | ||| |||| |||||||| | |||| |
|
|
| T |
32962220 |
ccactccactatgttcgtaatcacggacatgttcccaaagcatgttgggatgattggtccatcgaagtaactggtctggtaaaaaacccagcatgtttca |
32962121 |
T |
|
| Q |
249 |
cgatggcccaactaatcgacgacttcccaagtcatgaattccctgttacccttgtatgcgcgggtaaccggcgcaaggaacagaacatgataaaacaaag |
348 |
Q |
| |
|
|||||| |||||| ||| ||||||||||||| | |||||| ||||| || ||||| ||| | | || || |||||||| ||||| ||| | || || | |
|
|
| T |
32962120 |
cgatggaccaactcatcaacgacttcccaagccgtgaatttcctgtcacgcttgtttgctccgcgaatcgtcgcaaggagcagaatatggtgaagcagac |
32962021 |
T |
|
| Q |
349 |
cattggtttcaactggggtgcagctggtatctccacttcagtatggcgcggtgtaccattgtgcaccgtgcttaagagttgtgg |
432 |
Q |
| |
|
||||| || ||||||||| | ||| || |||||||||||||||||| |||||||||||| | |||||||| ||| ||||||| |
|
|
| T |
32962020 |
tattggatttaactggggtccgtctgctacctccacttcagtatggcgtggtgtaccattgagaaccgtgctcaagcgttgtgg |
32961937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 837 times since January 2019
Visitors: 6036